Strain Fitness in Xanthobacter sp. DMC5 around GFF2728

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2726 and GFF2727 are separated by 10 nucleotidesGFF2727 and GFF2728 are separated by 27 nucleotidesGFF2728 and GFF2729 are separated by 5 nucleotidesGFF2729 and GFF2730 are separated by 26 nucleotides GFF2726 - hypothetical protein, at 419,977 to 420,837 GFF2726 GFF2727 - Inner membrane ABC transporter permease protein YdcV, at 420,848 to 421,636 GFF2727 GFF2728 - hypothetical protein, at 421,664 to 422,242 GFF2728 GFF2729 - hypothetical protein, at 422,248 to 422,832 GFF2729 GFF2730 - Enamidase, at 422,859 to 424,064 GFF2730 Position (kb) 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 420.672 kb on + strand, within GFF2726at 420.706 kb on + strand, within GFF2726at 421.037 kb on + strand, within GFF2727at 421.037 kb on + strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.039 kb on + strand, within GFF2727at 421.039 kb on + strand, within GFF2727at 421.039 kb on + strand, within GFF2727at 421.040 kb on - strand, within GFF2727at 421.040 kb on - strand, within GFF2727at 421.051 kb on + strand, within GFF2727at 421.235 kb on + strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.538 kb on + strand, within GFF2727at 421.539 kb on - strand, within GFF2727at 421.539 kb on - strand, within GFF2727at 421.645 kb on + strandat 421.645 kb on + strandat 421.645 kb on + strandat 421.791 kb on - strand, within GFF2728at 421.970 kb on + strand, within GFF2728at 421.971 kb on - strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.291 kb on + strandat 422.377 kb on + strand, within GFF2729at 422.377 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.457 kb on - strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.486 kb on - strand, within GFF2729at 422.486 kb on - strand, within GFF2729at 422.504 kb on + strand, within GFF2729at 422.504 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.551 kb on - strand, within GFF2729at 422.910 kb on - strandat 422.960 kb on + strandat 422.960 kb on + strandat 422.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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420,672 + GFF2726 0.81 -0.4
420,706 + GFF2726 0.85 +0.0
421,037 + GFF2727 0.24 -0.7
421,037 + GFF2727 0.24 +1.6
421,038 - GFF2727 0.24 +0.4
421,038 - GFF2727 0.24 +0.5
421,038 - GFF2727 0.24 -0.1
421,038 - GFF2727 0.24 -0.1
421,038 - GFF2727 0.24 -0.7
421,038 - GFF2727 0.24 +0.8
421,038 - GFF2727 0.24 +1.3
421,039 + GFF2727 0.24 -1.0
421,039 + GFF2727 0.24 +1.3
421,039 + GFF2727 0.24 +0.7
421,040 - GFF2727 0.24 +0.5
421,040 - GFF2727 0.24 +1.1
421,051 + GFF2727 0.26 +0.2
421,235 + GFF2727 0.49 -0.7
421,296 - GFF2727 0.57 -1.5
421,296 - GFF2727 0.57 -2.0
421,296 - GFF2727 0.57 -0.1
421,296 - GFF2727 0.57 +0.6
421,296 - GFF2727 0.57 +0.9
421,296 - GFF2727 0.57 -0.4
421,296 - GFF2727 0.57 +1.3
421,538 + GFF2727 0.87 -0.7
421,539 - GFF2727 0.88 +0.3
421,539 - GFF2727 0.88 +0.5
421,645 + -0.6
421,645 + -0.1
421,645 + +0.7
421,791 - GFF2728 0.22 +0.3
421,970 + GFF2728 0.53 -0.1
421,971 - GFF2728 0.53 +0.3
422,068 + GFF2728 0.70 +1.1
422,068 + GFF2728 0.70 +1.4
422,068 + GFF2728 0.70 -0.4
422,068 + GFF2728 0.70 -0.3
422,069 - GFF2728 0.70 -0.1
422,069 - GFF2728 0.70 -0.2
422,069 - GFF2728 0.70 -0.2
422,081 + GFF2728 0.72 +0.8
422,081 + GFF2728 0.72 -0.2
422,081 + GFF2728 0.72 +0.7
422,081 + GFF2728 0.72 +0.4
422,081 + GFF2728 0.72 -0.1
422,081 + GFF2728 0.72 +0.7
422,081 + GFF2728 0.72 +0.3
422,082 - GFF2728 0.72 -0.2
422,082 - GFF2728 0.72 -1.1
422,082 - GFF2728 0.72 -1.9
422,291 + -1.4
422,377 + GFF2729 0.22 -0.3
422,377 + GFF2729 0.22 -0.4
422,456 + GFF2729 0.36 -0.3
422,456 + GFF2729 0.36 -1.1
422,456 + GFF2729 0.36 +2.4
422,457 - GFF2729 0.36 -0.9
422,485 + GFF2729 0.41 -0.7
422,485 + GFF2729 0.41 +0.1
422,485 + GFF2729 0.41 -0.9
422,486 - GFF2729 0.41 -0.1
422,486 - GFF2729 0.41 +0.1
422,504 + GFF2729 0.44 +0.1
422,504 + GFF2729 0.44 +0.1
422,550 + GFF2729 0.52 +2.1
422,550 + GFF2729 0.52 -0.6
422,550 + GFF2729 0.52 -0.1
422,550 + GFF2729 0.52 -0.6
422,551 - GFF2729 0.52 +0.8
422,910 - -0.9
422,960 + -0.9
422,960 + +1.1
422,961 - +0.1

Or see this region's nucleotide sequence