Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2697 and GFF2698 overlap by 14 nucleotides GFF2698 and GFF2699 are separated by 221 nucleotides
GFF2697 - Circadian clock protein kinase KaiC, at 378,850 to 380,373
GFF2697
GFF2698 - Sensor histidine kinase RcsC, at 380,360 to 382,423
GFF2698
GFF2699 - Tyrosine recombinase XerC, at 382,645 to 384,069
GFF2699
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -2
-1
0
1
2 at 379.465 kb on + strand, within GFF2697 at 379.465 kb on + strand, within GFF2697 at 379.466 kb on - strand, within GFF2697 at 379.466 kb on - strand, within GFF2697 at 379.466 kb on - strand, within GFF2697 at 379.466 kb on - strand, within GFF2697 at 379.680 kb on + strand, within GFF2697 at 379.680 kb on + strand, within GFF2697 at 379.681 kb on - strand, within GFF2697 at 379.681 kb on - strand, within GFF2697 at 379.681 kb on - strand, within GFF2697 at 379.710 kb on + strand, within GFF2697 at 379.710 kb on + strand, within GFF2697 at 379.710 kb on + strand, within GFF2697 at 379.711 kb on - strand, within GFF2697 at 379.711 kb on - strand, within GFF2697 at 379.711 kb on - strand, within GFF2697 at 379.711 kb on - strand, within GFF2697 at 379.718 kb on + strand, within GFF2697 at 379.718 kb on + strand, within GFF2697 at 379.718 kb on + strand, within GFF2697 at 379.718 kb on + strand, within GFF2697 at 379.719 kb on - strand, within GFF2697 at 379.719 kb on - strand, within GFF2697 at 379.719 kb on - strand, within GFF2697 at 379.859 kb on + strand, within GFF2697 at 379.859 kb on + strand, within GFF2697 at 379.859 kb on + strand, within GFF2697 at 379.860 kb on - strand, within GFF2697 at 379.866 kb on + strand, within GFF2697 at 379.866 kb on + strand, within GFF2697 at 379.866 kb on + strand, within GFF2697 at 380.019 kb on + strand, within GFF2697 at 380.019 kb on + strand, within GFF2697 at 380.020 kb on - strand, within GFF2697 at 380.020 kb on - strand, within GFF2697 at 380.038 kb on + strand, within GFF2697 at 380.038 kb on + strand, within GFF2697 at 380.039 kb on - strand, within GFF2697 at 380.039 kb on - strand, within GFF2697 at 380.125 kb on + strand, within GFF2697 at 380.125 kb on + strand, within GFF2697 at 380.125 kb on + strand, within GFF2697 at 380.126 kb on - strand, within GFF2697 at 380.126 kb on - strand, within GFF2697 at 380.126 kb on - strand, within GFF2697 at 380.126 kb on - strand, within GFF2697 at 380.155 kb on + strand, within GFF2697 at 380.156 kb on - strand, within GFF2697 at 380.156 kb on - strand, within GFF2697 at 380.198 kb on + strand, within GFF2697 at 380.198 kb on + strand, within GFF2697 at 380.198 kb on + strand, within GFF2697 at 380.198 kb on + strand, within GFF2697 at 380.198 kb on + strand, within GFF2697 at 380.199 kb on - strand, within GFF2697 at 380.199 kb on - strand, within GFF2697 at 380.199 kb on - strand, within GFF2697 at 380.199 kb on - strand, within GFF2697 at 380.247 kb on + strand at 380.339 kb on + strand at 380.339 kb on + strand at 380.340 kb on - strand at 380.340 kb on - strand at 380.340 kb on - strand at 380.371 kb on + strand at 380.371 kb on + strand at 380.371 kb on + strand at 380.371 kb on + strand at 380.371 kb on + strand at 380.371 kb on + strand at 380.372 kb on - strand at 380.372 kb on - strand at 380.372 kb on - strand at 380.406 kb on - strand at 380.406 kb on - strand at 380.406 kb on - strand at 380.552 kb on + strand at 380.552 kb on + strand at 380.553 kb on - strand at 380.553 kb on - strand at 380.716 kb on + strand, within GFF2698 at 380.716 kb on + strand, within GFF2698 at 380.716 kb on + strand, within GFF2698 at 380.717 kb on - strand, within GFF2698 at 380.717 kb on - strand, within GFF2698 at 380.717 kb on - strand, within GFF2698 at 380.768 kb on + strand, within GFF2698 at 380.768 kb on + strand, within GFF2698 at 380.769 kb on - strand, within GFF2698 at 380.860 kb on + strand, within GFF2698 at 380.860 kb on + strand, within GFF2698 at 380.861 kb on - strand, within GFF2698 at 380.861 kb on - strand, within GFF2698 at 380.861 kb on - strand, within GFF2698 at 380.861 kb on - strand, within GFF2698 at 380.861 kb on - strand, within GFF2698 at 381.195 kb on + strand, within GFF2698 at 381.195 kb on + strand, within GFF2698 at 381.196 kb on - strand, within GFF2698 at 381.196 kb on - strand, within GFF2698 at 381.196 kb on - strand, within GFF2698 at 381.196 kb on - strand, within GFF2698 at 381.331 kb on + strand, within GFF2698 at 381.332 kb on - strand, within GFF2698 at 381.529 kb on + strand, within GFF2698 at 381.529 kb on + strand, within GFF2698 at 381.529 kb on + strand, within GFF2698 at 381.549 kb on + strand, within GFF2698 at 381.550 kb on - strand, within GFF2698 at 381.550 kb on - strand, within GFF2698 at 381.582 kb on + strand, within GFF2698 at 381.582 kb on + strand, within GFF2698 at 381.582 kb on + strand, within GFF2698 at 381.583 kb on - strand, within GFF2698 at 381.726 kb on - strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.776 kb on + strand, within GFF2698 at 381.777 kb on - strand, within GFF2698 at 381.777 kb on - strand, within GFF2698 at 381.799 kb on + strand, within GFF2698 at 381.915 kb on + strand, within GFF2698 at 381.915 kb on + strand, within GFF2698 at 382.096 kb on + strand, within GFF2698 at 382.126 kb on + strand, within GFF2698 at 382.126 kb on + strand, within GFF2698 at 382.127 kb on - strand, within GFF2698 at 382.127 kb on - strand, within GFF2698 at 382.281 kb on + strand at 382.281 kb on + strand at 382.281 kb on + strand at 382.282 kb on - strand at 382.295 kb on + strand at 382.295 kb on + strand at 382.296 kb on - strand at 382.349 kb on + strand at 382.349 kb on + strand at 382.419 kb on + strand at 382.419 kb on + strand at 382.419 kb on + strand at 382.419 kb on + strand at 382.419 kb on + strand at 382.419 kb on + strand at 382.419 kb on + strand at 382.420 kb on - strand at 382.420 kb on - strand at 382.420 kb on - strand at 382.475 kb on + strand at 382.475 kb on + strand at 382.475 kb on + strand at 382.476 kb on - strand at 382.476 kb on - strand at 382.478 kb on - strand at 382.478 kb on - strand at 382.480 kb on + strand at 382.480 kb on + strand at 382.480 kb on + strand at 382.481 kb on - strand at 382.514 kb on + strand at 382.515 kb on - strand at 382.515 kb on - strand at 382.600 kb on + strand at 382.600 kb on + strand at 382.601 kb on - strand at 382.601 kb on - strand at 382.601 kb on - strand at 382.601 kb on - strand at 382.601 kb on - strand at 382.601 kb on - strand at 382.601 kb on - strand at 382.638 kb on + strand at 382.638 kb on + strand at 382.639 kb on - strand at 382.639 kb on - strand at 382.646 kb on + strand at 382.646 kb on + strand at 382.646 kb on + strand at 382.646 kb on + strand at 382.647 kb on - strand at 382.647 kb on - strand at 382.735 kb on - strand at 382.735 kb on - strand at 382.735 kb on - strand at 382.735 kb on - strand at 382.735 kb on - strand at 382.735 kb on - strand at 382.818 kb on - strand, within GFF2699 at 382.862 kb on + strand, within GFF2699 at 382.862 kb on + strand, within GFF2699 at 382.916 kb on + strand, within GFF2699 at 382.916 kb on + strand, within GFF2699 at 382.916 kb on + strand, within GFF2699 at 382.917 kb on - strand, within GFF2699 at 382.917 kb on - strand, within GFF2699 at 382.917 kb on - strand, within GFF2699 at 382.917 kb on - strand, within GFF2699 at 382.917 kb on - strand, within GFF2699 at 382.917 kb on - strand, within GFF2699 at 382.917 kb on - strand, within GFF2699 at 383.019 kb on + strand, within GFF2699 at 383.019 kb on + strand, within GFF2699 at 383.019 kb on + strand, within GFF2699 at 383.020 kb on - strand, within GFF2699 at 383.020 kb on - strand, within GFF2699 at 383.039 kb on - strand, within GFF2699 at 383.120 kb on + strand, within GFF2699 at 383.120 kb on + strand, within GFF2699 at 383.120 kb on + strand, within GFF2699 at 383.120 kb on + strand, within GFF2699 at 383.121 kb on - strand, within GFF2699 at 383.121 kb on - strand, within GFF2699 at 383.121 kb on - strand, within GFF2699 at 383.156 kb on + strand, within GFF2699 at 383.157 kb on - strand, within GFF2699 at 383.157 kb on - strand, within GFF2699 at 383.157 kb on - strand, within GFF2699 at 383.157 kb on - strand, within GFF2699 at 383.324 kb on + strand, within GFF2699 at 383.372 kb on + strand, within GFF2699 at 383.373 kb on - strand, within GFF2699
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 379,465 + GFF2697 0.40 +0.6 379,465 + GFF2697 0.40 +0.8 379,466 - GFF2697 0.40 +0.6 379,466 - GFF2697 0.40 -0.3 379,466 - GFF2697 0.40 +0.8 379,466 - GFF2697 0.40 -0.1 379,680 + GFF2697 0.54 +0.6 379,680 + GFF2697 0.54 -0.4 379,681 - GFF2697 0.55 -0.5 379,681 - GFF2697 0.55 -0.2 379,681 - GFF2697 0.55 +0.7 379,710 + GFF2697 0.56 +0.2 379,710 + GFF2697 0.56 +0.5 379,710 + GFF2697 0.56 -0.2 379,711 - GFF2697 0.56 +1.8 379,711 - GFF2697 0.56 -1.0 379,711 - GFF2697 0.56 +0.1 379,711 - GFF2697 0.56 -0.6 379,718 + GFF2697 0.57 +1.5 379,718 + GFF2697 0.57 -0.5 379,718 + GFF2697 0.57 -0.2 379,718 + GFF2697 0.57 +0.2 379,719 - GFF2697 0.57 +0.2 379,719 - GFF2697 0.57 -0.1 379,719 - GFF2697 0.57 -1.4 379,859 + GFF2697 0.66 -0.9 379,859 + GFF2697 0.66 -0.0 379,859 + GFF2697 0.66 -0.2 379,860 - GFF2697 0.66 +0.5 379,866 + GFF2697 0.67 +0.5 379,866 + GFF2697 0.67 -0.8 379,866 + GFF2697 0.67 -0.3 380,019 + GFF2697 0.77 +0.5 380,019 + GFF2697 0.77 +0.5 380,020 - GFF2697 0.77 -0.1 380,020 - GFF2697 0.77 +0.3 380,038 + GFF2697 0.78 -1.2 380,038 + GFF2697 0.78 -1.4 380,039 - GFF2697 0.78 +0.6 380,039 - GFF2697 0.78 -0.1 380,125 + GFF2697 0.84 -0.7 380,125 + GFF2697 0.84 -0.3 380,125 + GFF2697 0.84 -1.2 380,126 - GFF2697 0.84 +0.6 380,126 - GFF2697 0.84 +0.4 380,126 - GFF2697 0.84 +0.4 380,126 - GFF2697 0.84 -0.4 380,155 + GFF2697 0.86 -0.1 380,156 - GFF2697 0.86 +0.1 380,156 - GFF2697 0.86 +0.0 380,198 + GFF2697 0.88 +1.6 380,198 + GFF2697 0.88 -0.1 380,198 + GFF2697 0.88 +1.0 380,198 + GFF2697 0.88 -1.2 380,198 + GFF2697 0.88 -1.3 380,199 - GFF2697 0.89 +0.3 380,199 - GFF2697 0.89 -1.0 380,199 - GFF2697 0.89 +0.4 380,199 - GFF2697 0.89 +0.9 380,247 + -0.2 380,339 + +0.0 380,339 + -0.4 380,340 - -0.5 380,340 - +0.1 380,340 - +0.6 380,371 + +0.0 380,371 + +0.0 380,371 + -0.6 380,371 + -0.1 380,371 + -0.5 380,371 + -0.1 380,372 - +0.3 380,372 - -0.1 380,372 - +1.9 380,406 - -0.5 380,406 - -0.1 380,406 - +0.9 380,552 + +1.0 380,552 + +0.7 380,553 - +0.4 380,553 - +0.2 380,716 + GFF2698 0.17 +0.4 380,716 + GFF2698 0.17 +0.7 380,716 + GFF2698 0.17 -0.2 380,717 - GFF2698 0.17 -0.6 380,717 - GFF2698 0.17 -1.0 380,717 - GFF2698 0.17 -0.7 380,768 + GFF2698 0.20 +0.8 380,768 + GFF2698 0.20 +1.0 380,769 - GFF2698 0.20 +0.5 380,860 + GFF2698 0.24 -0.0 380,860 + GFF2698 0.24 -1.7 380,861 - GFF2698 0.24 +0.0 380,861 - GFF2698 0.24 +0.6 380,861 - GFF2698 0.24 -0.8 380,861 - GFF2698 0.24 +0.0 380,861 - GFF2698 0.24 -0.5 381,195 + GFF2698 0.40 -0.5 381,195 + GFF2698 0.40 -0.4 381,196 - GFF2698 0.41 +1.6 381,196 - GFF2698 0.41 -0.3 381,196 - GFF2698 0.41 -0.7 381,196 - GFF2698 0.41 -0.2 381,331 + GFF2698 0.47 +0.2 381,332 - GFF2698 0.47 -0.4 381,529 + GFF2698 0.57 -0.2 381,529 + GFF2698 0.57 -0.5 381,529 + GFF2698 0.57 -0.1 381,549 + GFF2698 0.58 -1.2 381,550 - GFF2698 0.58 -0.0 381,550 - GFF2698 0.58 +0.6 381,582 + GFF2698 0.59 +0.1 381,582 + GFF2698 0.59 +0.0 381,582 + GFF2698 0.59 +0.1 381,583 - GFF2698 0.59 +0.5 381,726 - GFF2698 0.66 +0.2 381,776 + GFF2698 0.69 +0.9 381,776 + GFF2698 0.69 -0.7 381,776 + GFF2698 0.69 +0.1 381,776 + GFF2698 0.69 +0.5 381,776 + GFF2698 0.69 +0.0 381,776 + GFF2698 0.69 -0.6 381,776 + GFF2698 0.69 +0.3 381,776 + GFF2698 0.69 +0.6 381,776 + GFF2698 0.69 +1.2 381,777 - GFF2698 0.69 -0.5 381,777 - GFF2698 0.69 -1.0 381,799 + GFF2698 0.70 -0.1 381,915 + GFF2698 0.75 +0.4 381,915 + GFF2698 0.75 +0.4 382,096 + GFF2698 0.84 -0.7 382,126 + GFF2698 0.86 +0.0 382,126 + GFF2698 0.86 +0.7 382,127 - GFF2698 0.86 -0.1 382,127 - GFF2698 0.86 +0.0 382,281 + +0.1 382,281 + -0.4 382,281 + +0.2 382,282 - +0.1 382,295 + -0.0 382,295 + +1.0 382,296 - +0.0 382,349 + +0.6 382,349 + -0.2 382,419 + -1.2 382,419 + +0.1 382,419 + +0.7 382,419 + -0.7 382,419 + -0.9 382,419 + -0.4 382,419 + +0.0 382,420 - -0.8 382,420 - -0.1 382,420 - +0.6 382,475 + +0.3 382,475 + +0.5 382,475 + -0.8 382,476 - -0.1 382,476 - +0.0 382,478 - +0.7 382,478 - -1.3 382,480 + +1.3 382,480 + +0.9 382,480 + -0.9 382,481 - -0.3 382,514 + -0.3 382,515 - +1.0 382,515 - +0.4 382,600 + -1.0 382,600 + +0.9 382,601 - +1.2 382,601 - +0.2 382,601 - -0.8 382,601 - -0.4 382,601 - -1.5 382,601 - -0.3 382,601 - +0.9 382,638 + +0.3 382,638 + -0.4 382,639 - -1.3 382,639 - +1.3 382,646 + +1.0 382,646 + -0.1 382,646 + -0.1 382,646 + -0.4 382,647 - +0.1 382,647 - -0.5 382,735 - +0.5 382,735 - -1.8 382,735 - -0.9 382,735 - +0.4 382,735 - -1.8 382,735 - +0.2 382,818 - GFF2699 0.12 +0.6 382,862 + GFF2699 0.15 +0.7 382,862 + GFF2699 0.15 -0.1 382,916 + GFF2699 0.19 -0.3 382,916 + GFF2699 0.19 -0.5 382,916 + GFF2699 0.19 -0.1 382,917 - GFF2699 0.19 -1.8 382,917 - GFF2699 0.19 +0.8 382,917 - GFF2699 0.19 -0.9 382,917 - GFF2699 0.19 -0.8 382,917 - GFF2699 0.19 -0.9 382,917 - GFF2699 0.19 +0.9 382,917 - GFF2699 0.19 +1.8 383,019 + GFF2699 0.26 +0.2 383,019 + GFF2699 0.26 -1.2 383,019 + GFF2699 0.26 -0.3 383,020 - GFF2699 0.26 +0.7 383,020 - GFF2699 0.26 -1.2 383,039 - GFF2699 0.28 +0.4 383,120 + GFF2699 0.33 +0.9 383,120 + GFF2699 0.33 -0.7 383,120 + GFF2699 0.33 +0.5 383,120 + GFF2699 0.33 +0.5 383,121 - GFF2699 0.33 -0.3 383,121 - GFF2699 0.33 +0.8 383,121 - GFF2699 0.33 -0.8 383,156 + GFF2699 0.36 -0.4 383,157 - GFF2699 0.36 +1.5 383,157 - GFF2699 0.36 -1.0 383,157 - GFF2699 0.36 +0.8 383,157 - GFF2699 0.36 -0.7 383,324 + GFF2699 0.48 +0.7 383,372 + GFF2699 0.51 -2.3 383,373 - GFF2699 0.51 +0.3
Or see this region's nucleotide sequence