Strain Fitness in Xanthobacter sp. DMC5 around GFF2688

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2687 and GFF2688 are separated by 50 nucleotidesGFF2688 and GFF2689 are separated by 115 nucleotidesGFF2689 and GFF2690 are separated by 266 nucleotides GFF2687 - hypothetical protein, at 370,863 to 372,602 GFF2687 GFF2688 - hypothetical protein, at 372,653 to 373,720 GFF2688 GFF2689 - hypothetical protein, at 373,836 to 374,132 GFF2689 GFF2690 - hypothetical protein, at 374,399 to 375,190 GFF2690 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1 2at 371.778 kb on + strand, within GFF2687at 371.778 kb on + strand, within GFF2687at 371.778 kb on + strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 372.193 kb on + strand, within GFF2687at 372.194 kb on - strand, within GFF2687at 372.194 kb on - strand, within GFF2687at 372.205 kb on + strand, within GFF2687at 372.214 kb on + strand, within GFF2687at 372.214 kb on + strand, within GFF2687at 372.215 kb on - strand, within GFF2687at 372.215 kb on - strand, within GFF2687at 372.224 kb on - strand, within GFF2687at 372.224 kb on - strand, within GFF2687at 372.592 kb on + strandat 372.592 kb on + strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.605 kb on + strandat 372.605 kb on + strandat 372.605 kb on + strandat 372.606 kb on - strandat 372.606 kb on - strandat 372.654 kb on + strandat 372.654 kb on + strandat 372.670 kb on + strandat 372.670 kb on + strandat 372.670 kb on + strandat 372.671 kb on - strandat 372.678 kb on + strandat 372.819 kb on + strand, within GFF2688at 372.819 kb on + strand, within GFF2688at 372.819 kb on + strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.976 kb on - strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.111 kb on + strand, within GFF2688at 373.111 kb on + strand, within GFF2688at 373.112 kb on - strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.258 kb on - strand, within GFF2688at 373.258 kb on - strand, within GFF2688at 373.415 kb on - strand, within GFF2688at 373.450 kb on - strand, within GFF2688at 373.545 kb on - strand, within GFF2688at 373.567 kb on + strand, within GFF2688at 373.611 kb on + strand, within GFF2688at 373.750 kb on + strandat 373.857 kb on - strandat 374.033 kb on + strand, within GFF2689at 374.034 kb on - strand, within GFF2689at 374.034 kb on - strand, within GFF2689at 374.307 kb on + strandat 374.307 kb on + strandat 374.307 kb on + strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.318 kb on - strandat 374.455 kb on - strandat 374.490 kb on - strand, within GFF2690at 374.490 kb on - strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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371,778 + GFF2687 0.53 -0.8
371,778 + GFF2687 0.53 +0.6
371,778 + GFF2687 0.53 +0.0
371,779 - GFF2687 0.53 +0.9
371,779 - GFF2687 0.53 -1.3
371,779 - GFF2687 0.53 -1.8
371,779 - GFF2687 0.53 -0.5
371,779 - GFF2687 0.53 -1.0
371,779 - GFF2687 0.53 +0.0
371,779 - GFF2687 0.53 +0.6
372,193 + GFF2687 0.76 +0.8
372,194 - GFF2687 0.76 -0.0
372,194 - GFF2687 0.76 -1.8
372,205 + GFF2687 0.77 +0.3
372,214 + GFF2687 0.78 +1.5
372,214 + GFF2687 0.78 -1.5
372,215 - GFF2687 0.78 -0.2
372,215 - GFF2687 0.78 -1.4
372,224 - GFF2687 0.78 +0.7
372,224 - GFF2687 0.78 +0.1
372,592 + -2.2
372,592 + -1.0
372,593 - -1.0
372,593 - +0.8
372,593 - -0.1
372,593 - +0.5
372,593 - +0.3
372,593 - +1.0
372,593 - +0.2
372,593 - -1.4
372,593 - +0.8
372,605 + -1.1
372,605 + -0.2
372,605 + +0.8
372,606 - +0.9
372,606 - -1.4
372,654 + -1.5
372,654 + +0.5
372,670 + +0.3
372,670 + -0.2
372,670 + +0.6
372,671 - +0.1
372,678 + -0.2
372,819 + GFF2688 0.16 -0.0
372,819 + GFF2688 0.16 +0.8
372,819 + GFF2688 0.16 +1.2
372,820 - GFF2688 0.16 +0.5
372,820 - GFF2688 0.16 +1.3
372,820 - GFF2688 0.16 -1.2
372,820 - GFF2688 0.16 +0.7
372,820 - GFF2688 0.16 -1.1
372,820 - GFF2688 0.16 -0.4
372,820 - GFF2688 0.16 -1.6
372,820 - GFF2688 0.16 -0.5
372,976 - GFF2688 0.30 -0.2
373,068 + GFF2688 0.39 +0.6
373,068 + GFF2688 0.39 +0.9
373,068 + GFF2688 0.39 +1.0
373,069 - GFF2688 0.39 -1.4
373,069 - GFF2688 0.39 +0.8
373,069 - GFF2688 0.39 -0.9
373,069 - GFF2688 0.39 +0.0
373,111 + GFF2688 0.43 -0.9
373,111 + GFF2688 0.43 +1.2
373,112 - GFF2688 0.43 +0.3
373,257 + GFF2688 0.57 +0.3
373,257 + GFF2688 0.57 +2.5
373,257 + GFF2688 0.57 -1.0
373,257 + GFF2688 0.57 +0.1
373,258 - GFF2688 0.57 +0.7
373,258 - GFF2688 0.57 -0.7
373,415 - GFF2688 0.71 -0.0
373,450 - GFF2688 0.75 +1.1
373,545 - GFF2688 0.84 +0.0
373,567 + GFF2688 0.86 -0.7
373,611 + GFF2688 0.90 +0.1
373,750 + -0.5
373,857 - +0.2
374,033 + GFF2689 0.66 -0.3
374,034 - GFF2689 0.67 +1.5
374,034 - GFF2689 0.67 -0.7
374,307 + +0.1
374,307 + -1.8
374,307 + -0.4
374,308 - -0.5
374,308 - +0.0
374,308 - -0.0
374,308 - +1.0
374,308 - +0.4
374,308 - -1.6
374,308 - +0.0
374,308 - -0.3
374,318 - -0.4
374,455 - +0.5
374,490 - GFF2690 0.11 +0.2
374,490 - GFF2690 0.11 +0.3
374,491 + GFF2690 0.12 +0.0
374,491 + GFF2690 0.12 -0.1
374,491 + GFF2690 0.12 -0.9
374,491 + GFF2690 0.12 +0.8
374,491 + GFF2690 0.12 +1.1
374,491 + GFF2690 0.12 +0.9
374,492 - GFF2690 0.12 +0.1
374,492 - GFF2690 0.12 -0.7
374,492 - GFF2690 0.12 +0.2
374,492 - GFF2690 0.12 -0.3

Or see this region's nucleotide sequence