Strain Fitness in Xanthobacter sp. DMC5 around GFF2654

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2653 and GFF2654 overlap by 4 nucleotidesGFF2654 and GFF2655 overlap by 4 nucleotidesGFF2655 and GFF2656 overlap by 4 nucleotidesGFF2656 and GFF2657 overlap by 4 nucleotides GFF2653 - Cytochrome c oxidase subunit 2, at 340,529 to 341,557 GFF2653 GFF2654 - hypothetical protein, at 341,554 to 343,506 GFF2654 GFF2655 - hypothetical protein, at 343,503 to 344,123 GFF2655 GFF2656 - hypothetical protein, at 344,120 to 344,443 GFF2656 GFF2657 - hypothetical protein, at 344,440 to 345,270 GFF2657 Position (kb) 341 342 343 344Strain fitness (log2 ratio) -2 -1 0 1 2at 340.946 kb on + strand, within GFF2653at 340.947 kb on - strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.439 kb on - strand, within GFF2653at 341.439 kb on - strand, within GFF2653at 341.488 kb on + strandat 341.488 kb on + strandat 341.489 kb on - strandat 341.489 kb on - strandat 341.489 kb on - strandat 341.538 kb on - strandat 341.716 kb on + strandat 341.716 kb on + strandat 341.716 kb on + strandat 341.717 kb on - strandat 341.717 kb on - strandat 341.717 kb on - strandat 341.821 kb on + strand, within GFF2654at 341.821 kb on + strand, within GFF2654at 341.822 kb on - strand, within GFF2654at 341.835 kb on + strand, within GFF2654at 341.836 kb on - strand, within GFF2654at 341.899 kb on + strand, within GFF2654at 341.899 kb on + strand, within GFF2654at 341.899 kb on + strand, within GFF2654at 341.899 kb on + strand, within GFF2654at 341.900 kb on - strand, within GFF2654at 341.900 kb on - strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.966 kb on - strand, within GFF2654at 341.966 kb on - strand, within GFF2654at 341.966 kb on - strand, within GFF2654at 341.971 kb on + strand, within GFF2654at 341.971 kb on + strand, within GFF2654at 341.972 kb on - strand, within GFF2654at 342.067 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.316 kb on + strand, within GFF2654at 342.368 kb on - strand, within GFF2654at 342.388 kb on + strand, within GFF2654at 342.388 kb on + strand, within GFF2654at 342.388 kb on + strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.463 kb on + strand, within GFF2654at 342.475 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.841 kb on + strand, within GFF2654at 342.842 kb on - strand, within GFF2654at 342.905 kb on - strand, within GFF2654at 342.923 kb on + strand, within GFF2654at 342.923 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.977 kb on - strand, within GFF2654at 342.977 kb on - strand, within GFF2654at 342.977 kb on - strand, within GFF2654at 342.977 kb on - strand, within GFF2654at 342.982 kb on + strand, within GFF2654at 342.982 kb on + strand, within GFF2654at 342.982 kb on + strand, within GFF2654at 342.983 kb on - strand, within GFF2654at 342.983 kb on - strand, within GFF2654at 343.147 kb on - strand, within GFF2654at 343.232 kb on + strand, within GFF2654at 343.232 kb on + strand, within GFF2654at 343.232 kb on + strand, within GFF2654at 343.233 kb on - strand, within GFF2654at 343.451 kb on - strandat 343.451 kb on - strandat 343.644 kb on + strand, within GFF2655at 343.644 kb on + strand, within GFF2655at 343.644 kb on + strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.650 kb on + strand, within GFF2655at 343.650 kb on + strand, within GFF2655at 343.651 kb on - strand, within GFF2655at 343.651 kb on - strand, within GFF2655at 343.651 kb on - strand, within GFF2655at 343.724 kb on - strand, within GFF2655at 343.724 kb on - strand, within GFF2655at 343.724 kb on - strand, within GFF2655at 343.724 kb on - strand, within GFF2655at 343.896 kb on + strand, within GFF2655at 343.896 kb on + strand, within GFF2655at 343.896 kb on + strand, within GFF2655at 343.896 kb on + strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.915 kb on + strand, within GFF2655at 343.916 kb on - strand, within GFF2655at 343.916 kb on - strand, within GFF2655at 343.932 kb on - strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.987 kb on - strand, within GFF2655at 344.040 kb on + strand, within GFF2655at 344.040 kb on + strand, within GFF2655at 344.040 kb on + strand, within GFF2655at 344.041 kb on - strand, within GFF2655at 344.041 kb on - strand, within GFF2655at 344.076 kb on + strandat 344.076 kb on + strandat 344.076 kb on + strandat 344.076 kb on + strandat 344.076 kb on + strandat 344.076 kb on + strandat 344.077 kb on - strandat 344.077 kb on - strandat 344.077 kb on - strandat 344.077 kb on - strandat 344.088 kb on + strandat 344.088 kb on + strandat 344.089 kb on - strandat 344.089 kb on - strandat 344.089 kb on - strandat 344.204 kb on + strand, within GFF2656at 344.204 kb on + strand, within GFF2656at 344.205 kb on - strand, within GFF2656at 344.205 kb on - strand, within GFF2656at 344.229 kb on - strand, within GFF2656at 344.229 kb on - strand, within GFF2656at 344.229 kb on - strand, within GFF2656at 344.229 kb on - strand, within GFF2656at 344.397 kb on + strand, within GFF2656at 344.397 kb on + strand, within GFF2656at 344.398 kb on - strand, within GFF2656at 344.398 kb on - strand, within GFF2656at 344.398 kb on - strand, within GFF2656at 344.423 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.476 kb on - strandat 344.476 kb on - strandat 344.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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340,946 + GFF2653 0.41 +0.9
340,947 - GFF2653 0.41 +0.7
341,438 + GFF2653 0.88 -0.2
341,438 + GFF2653 0.88 +0.3
341,438 + GFF2653 0.88 +1.7
341,438 + GFF2653 0.88 +0.1
341,439 - GFF2653 0.88 +0.1
341,439 - GFF2653 0.88 +0.9
341,488 + -0.1
341,488 + -0.0
341,489 - +1.1
341,489 - -0.9
341,489 - +1.6
341,538 - -0.9
341,716 + +0.4
341,716 + -0.3
341,716 + +0.1
341,717 - -0.4
341,717 - -2.3
341,717 - -0.2
341,821 + GFF2654 0.14 +0.0
341,821 + GFF2654 0.14 +0.5
341,822 - GFF2654 0.14 -0.9
341,835 + GFF2654 0.14 -0.7
341,836 - GFF2654 0.14 -0.2
341,899 + GFF2654 0.18 +0.2
341,899 + GFF2654 0.18 -0.2
341,899 + GFF2654 0.18 -0.1
341,899 + GFF2654 0.18 +0.0
341,900 - GFF2654 0.18 -0.8
341,900 - GFF2654 0.18 +0.3
341,962 + GFF2654 0.21 -0.1
341,962 + GFF2654 0.21 -0.8
341,962 + GFF2654 0.21 +0.0
341,962 + GFF2654 0.21 -1.0
341,962 + GFF2654 0.21 +1.4
341,966 - GFF2654 0.21 +1.0
341,966 - GFF2654 0.21 +0.6
341,966 - GFF2654 0.21 +1.0
341,971 + GFF2654 0.21 +0.0
341,971 + GFF2654 0.21 +0.8
341,972 - GFF2654 0.21 -0.5
342,067 + GFF2654 0.26 -1.6
342,094 + GFF2654 0.28 +0.8
342,094 + GFF2654 0.28 -0.1
342,094 + GFF2654 0.28 -0.6
342,094 + GFF2654 0.28 +1.0
342,094 + GFF2654 0.28 -0.3
342,095 - GFF2654 0.28 -0.8
342,095 - GFF2654 0.28 +0.0
342,095 - GFF2654 0.28 -0.4
342,095 - GFF2654 0.28 +0.3
342,095 - GFF2654 0.28 -0.7
342,095 - GFF2654 0.28 +0.4
342,095 - GFF2654 0.28 -0.7
342,316 + GFF2654 0.39 +0.3
342,368 - GFF2654 0.42 +0.2
342,388 + GFF2654 0.43 +0.0
342,388 + GFF2654 0.43 -0.2
342,388 + GFF2654 0.43 -0.1
342,389 - GFF2654 0.43 +0.5
342,389 - GFF2654 0.43 +0.4
342,389 - GFF2654 0.43 -1.7
342,389 - GFF2654 0.43 -0.3
342,389 - GFF2654 0.43 -0.3
342,389 - GFF2654 0.43 +0.0
342,389 - GFF2654 0.43 +0.4
342,389 - GFF2654 0.43 -0.7
342,389 - GFF2654 0.43 +0.4
342,463 + GFF2654 0.47 +0.4
342,475 + GFF2654 0.47 -1.6
342,532 + GFF2654 0.50 -1.0
342,532 + GFF2654 0.50 -0.3
342,532 + GFF2654 0.50 -0.4
342,532 + GFF2654 0.50 +0.1
342,532 + GFF2654 0.50 +0.6
342,532 + GFF2654 0.50 +0.6
342,533 - GFF2654 0.50 +0.8
342,533 - GFF2654 0.50 +0.1
342,533 - GFF2654 0.50 +0.7
342,533 - GFF2654 0.50 +0.3
342,533 - GFF2654 0.50 +0.3
342,533 - GFF2654 0.50 -1.4
342,766 + GFF2654 0.62 -0.2
342,766 + GFF2654 0.62 -0.0
342,766 + GFF2654 0.62 +0.1
342,766 + GFF2654 0.62 +0.7
342,766 + GFF2654 0.62 +0.1
342,766 + GFF2654 0.62 +0.2
342,766 + GFF2654 0.62 +0.3
342,767 - GFF2654 0.62 -0.3
342,767 - GFF2654 0.62 +0.2
342,767 - GFF2654 0.62 -1.2
342,767 - GFF2654 0.62 -1.2
342,767 - GFF2654 0.62 -0.2
342,767 - GFF2654 0.62 -0.7
342,767 - GFF2654 0.62 +0.4
342,767 - GFF2654 0.62 -0.5
342,767 - GFF2654 0.62 -0.5
342,767 - GFF2654 0.62 -0.3
342,767 - GFF2654 0.62 +1.1
342,841 + GFF2654 0.66 +1.3
342,842 - GFF2654 0.66 -0.3
342,905 - GFF2654 0.69 +0.7
342,923 + GFF2654 0.70 -2.4
342,923 + GFF2654 0.70 -0.1
342,976 + GFF2654 0.73 +1.7
342,976 + GFF2654 0.73 -0.3
342,976 + GFF2654 0.73 +0.1
342,976 + GFF2654 0.73 +2.2
342,976 + GFF2654 0.73 -1.0
342,977 - GFF2654 0.73 -0.3
342,977 - GFF2654 0.73 -0.1
342,977 - GFF2654 0.73 +0.8
342,977 - GFF2654 0.73 +0.0
342,982 + GFF2654 0.73 -0.1
342,982 + GFF2654 0.73 -1.4
342,982 + GFF2654 0.73 +1.2
342,983 - GFF2654 0.73 -0.3
342,983 - GFF2654 0.73 -1.6
343,147 - GFF2654 0.82 -1.3
343,232 + GFF2654 0.86 +0.9
343,232 + GFF2654 0.86 -0.2
343,232 + GFF2654 0.86 -0.8
343,233 - GFF2654 0.86 -0.2
343,451 - +0.9
343,451 - -0.0
343,644 + GFF2655 0.23 +0.1
343,644 + GFF2655 0.23 -0.2
343,644 + GFF2655 0.23 -1.7
343,645 - GFF2655 0.23 +0.7
343,645 - GFF2655 0.23 -0.4
343,645 - GFF2655 0.23 +0.8
343,645 - GFF2655 0.23 -1.0
343,645 - GFF2655 0.23 +0.2
343,645 - GFF2655 0.23 +0.3
343,645 - GFF2655 0.23 -0.8
343,645 - GFF2655 0.23 +0.3
343,645 - GFF2655 0.23 -0.6
343,650 + GFF2655 0.24 +0.5
343,650 + GFF2655 0.24 -1.8
343,651 - GFF2655 0.24 +0.3
343,651 - GFF2655 0.24 -0.2
343,651 - GFF2655 0.24 -0.2
343,724 - GFF2655 0.36 -0.4
343,724 - GFF2655 0.36 -0.3
343,724 - GFF2655 0.36 +0.0
343,724 - GFF2655 0.36 +0.3
343,896 + GFF2655 0.63 -0.1
343,896 + GFF2655 0.63 +1.1
343,896 + GFF2655 0.63 -0.0
343,896 + GFF2655 0.63 -0.2
343,897 - GFF2655 0.63 -0.6
343,897 - GFF2655 0.63 -0.0
343,897 - GFF2655 0.63 +1.0
343,897 - GFF2655 0.63 -0.2
343,897 - GFF2655 0.63 -0.8
343,897 - GFF2655 0.63 +0.8
343,897 - GFF2655 0.63 +1.4
343,915 + GFF2655 0.66 +0.0
343,916 - GFF2655 0.67 -0.8
343,916 - GFF2655 0.67 -0.2
343,932 - GFF2655 0.69 +0.3
343,986 + GFF2655 0.78 +1.6
343,986 + GFF2655 0.78 -0.4
343,986 + GFF2655 0.78 -1.2
343,986 + GFF2655 0.78 -0.2
343,986 + GFF2655 0.78 -0.5
343,986 + GFF2655 0.78 -1.5
343,986 + GFF2655 0.78 +0.6
343,986 + GFF2655 0.78 -0.3
343,987 - GFF2655 0.78 -0.7
344,040 + GFF2655 0.86 +0.7
344,040 + GFF2655 0.86 +0.5
344,040 + GFF2655 0.86 +0.0
344,041 - GFF2655 0.87 +0.3
344,041 - GFF2655 0.87 -2.0
344,076 + +0.5
344,076 + +0.6
344,076 + +0.3
344,076 + -0.6
344,076 + +0.1
344,076 + +2.3
344,077 - +1.6
344,077 - +1.6
344,077 - -0.6
344,077 - +1.3
344,088 + -1.0
344,088 + +0.3
344,089 - +0.3
344,089 - -0.6
344,089 - +0.4
344,204 + GFF2656 0.26 +0.2
344,204 + GFF2656 0.26 -0.3
344,205 - GFF2656 0.26 +0.0
344,205 - GFF2656 0.26 +0.6
344,229 - GFF2656 0.34 +0.0
344,229 - GFF2656 0.34 +0.4
344,229 - GFF2656 0.34 -0.2
344,229 - GFF2656 0.34 +0.3
344,397 + GFF2656 0.85 -0.7
344,397 + GFF2656 0.85 -1.7
344,398 - GFF2656 0.86 -0.2
344,398 - GFF2656 0.86 +0.5
344,398 - GFF2656 0.86 -0.2
344,423 + +0.0
344,475 + -0.1
344,475 + -0.1
344,475 + -1.0
344,475 + -1.3
344,475 + +0.8
344,475 + -0.5
344,476 - -0.3
344,476 - -0.3
344,476 - +0.2

Or see this region's nucleotide sequence