Strain Fitness in Xanthobacter sp. DMC5 around GFF2650

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2649 and GFF2650 are separated by 399 nucleotidesGFF2650 and GFF2651 are separated by 237 nucleotides GFF2649 - hypothetical protein, at 335,399 to 335,941 GFF2649 GFF2650 - Oligo-1,6-glucosidase 1, at 336,341 to 337,969 GFF2650 GFF2651 - Methanol dehydrogenase [cytochrome c] subunit 1, at 338,207 to 339,928 GFF2651 Position (kb) 336 337 338Strain fitness (log2 ratio) -2 -1 0 1 2 3at 335.352 kb on + strandat 335.352 kb on + strandat 335.352 kb on + strandat 335.353 kb on - strandat 335.353 kb on - strandat 335.412 kb on + strandat 335.412 kb on + strandat 335.413 kb on - strandat 335.413 kb on - strandat 335.413 kb on - strandat 335.486 kb on - strand, within GFF2649at 335.486 kb on - strand, within GFF2649at 335.762 kb on - strand, within GFF2649at 335.762 kb on - strand, within GFF2649at 335.791 kb on + strand, within GFF2649at 335.791 kb on + strand, within GFF2649at 335.791 kb on + strand, within GFF2649at 335.791 kb on + strand, within GFF2649at 335.791 kb on + strand, within GFF2649at 335.792 kb on - strand, within GFF2649at 335.840 kb on + strand, within GFF2649at 335.841 kb on - strand, within GFF2649at 335.927 kb on - strandat 335.927 kb on - strandat 335.927 kb on - strandat 335.927 kb on - strandat 336.003 kb on + strandat 336.003 kb on + strandat 336.086 kb on + strandat 336.087 kb on - strandat 336.118 kb on - strandat 336.137 kb on - strandat 336.322 kb on + strandat 336.322 kb on + strandat 336.322 kb on + strandat 336.322 kb on + strandat 336.322 kb on + strandat 336.323 kb on - strandat 336.323 kb on - strandat 336.323 kb on - strandat 336.323 kb on - strandat 336.350 kb on - strandat 336.350 kb on - strandat 336.350 kb on - strandat 336.350 kb on - strandat 336.425 kb on + strandat 336.425 kb on + strandat 336.425 kb on + strandat 336.426 kb on - strandat 336.447 kb on - strandat 336.447 kb on - strandat 336.447 kb on - strandat 336.506 kb on + strand, within GFF2650at 336.506 kb on + strand, within GFF2650at 336.506 kb on + strand, within GFF2650at 336.506 kb on + strand, within GFF2650at 336.506 kb on + strand, within GFF2650at 336.506 kb on + strand, within GFF2650at 336.506 kb on + strand, within GFF2650at 336.507 kb on - strand, within GFF2650at 336.507 kb on - strand, within GFF2650at 336.507 kb on - strand, within GFF2650at 336.511 kb on - strand, within GFF2650at 336.511 kb on - strand, within GFF2650at 336.578 kb on + strand, within GFF2650at 336.579 kb on - strand, within GFF2650at 336.583 kb on + strand, within GFF2650at 336.583 kb on + strand, within GFF2650at 336.583 kb on + strand, within GFF2650at 336.583 kb on + strand, within GFF2650at 336.583 kb on + strand, within GFF2650at 336.583 kb on + strand, within GFF2650at 336.584 kb on - strand, within GFF2650at 336.584 kb on - strand, within GFF2650at 336.584 kb on - strand, within GFF2650at 336.593 kb on + strand, within GFF2650at 336.593 kb on + strand, within GFF2650at 336.594 kb on - strand, within GFF2650at 336.594 kb on - strand, within GFF2650at 336.629 kb on + strand, within GFF2650at 336.654 kb on + strand, within GFF2650at 336.655 kb on - strand, within GFF2650at 336.767 kb on + strand, within GFF2650at 336.767 kb on + strand, within GFF2650at 336.767 kb on + strand, within GFF2650at 336.768 kb on - strand, within GFF2650at 336.768 kb on - strand, within GFF2650at 336.768 kb on - strand, within GFF2650at 336.768 kb on - strand, within GFF2650at 336.768 kb on - strand, within GFF2650at 336.817 kb on + strand, within GFF2650at 336.817 kb on + strand, within GFF2650at 336.817 kb on + strand, within GFF2650at 336.817 kb on + strand, within GFF2650at 336.817 kb on + strand, within GFF2650at 336.818 kb on - strand, within GFF2650at 336.866 kb on + strand, within GFF2650at 336.866 kb on + strand, within GFF2650at 336.869 kb on + strand, within GFF2650at 336.869 kb on + strand, within GFF2650at 336.869 kb on + strand, within GFF2650at 336.869 kb on + strand, within GFF2650at 336.870 kb on - strand, within GFF2650at 336.870 kb on - strand, within GFF2650at 336.870 kb on - strand, within GFF2650at 336.870 kb on - strand, within GFF2650at 336.870 kb on - strand, within GFF2650at 336.870 kb on - strand, within GFF2650at 336.870 kb on - strand, within GFF2650at 336.870 kb on - strand, within GFF2650at 336.873 kb on - strand, within GFF2650at 336.873 kb on - strand, within GFF2650at 336.924 kb on + strand, within GFF2650at 336.924 kb on + strand, within GFF2650at 336.924 kb on + strand, within GFF2650at 336.942 kb on - strand, within GFF2650at 337.023 kb on + strand, within GFF2650at 337.023 kb on + strand, within GFF2650at 337.023 kb on + strand, within GFF2650at 337.023 kb on + strand, within GFF2650at 337.023 kb on + strand, within GFF2650at 337.024 kb on - strand, within GFF2650at 337.214 kb on + strand, within GFF2650at 337.214 kb on + strand, within GFF2650at 337.214 kb on + strand, within GFF2650at 337.215 kb on - strand, within GFF2650at 337.656 kb on + strand, within GFF2650at 337.656 kb on + strand, within GFF2650at 337.657 kb on - strand, within GFF2650at 337.657 kb on - strand, within GFF2650at 337.657 kb on - strand, within GFF2650at 337.697 kb on + strand, within GFF2650at 337.697 kb on + strand, within GFF2650at 337.697 kb on + strand, within GFF2650at 337.697 kb on + strand, within GFF2650at 337.697 kb on + strand, within GFF2650at 337.697 kb on + strand, within GFF2650at 337.697 kb on + strand, within GFF2650at 337.698 kb on - strand, within GFF2650at 337.752 kb on - strand, within GFF2650at 337.752 kb on - strand, within GFF2650at 337.752 kb on - strand, within GFF2650at 337.787 kb on + strand, within GFF2650at 337.787 kb on + strand, within GFF2650at 337.787 kb on + strand, within GFF2650at 337.787 kb on + strand, within GFF2650at 337.788 kb on - strand, within GFF2650at 337.788 kb on - strand, within GFF2650at 337.788 kb on - strand, within GFF2650at 337.788 kb on - strand, within GFF2650at 337.788 kb on - strand, within GFF2650at 337.963 kb on + strandat 337.963 kb on + strandat 337.963 kb on + strandat 337.963 kb on + strandat 337.968 kb on - strandat 337.972 kb on + strandat 338.081 kb on - strandat 338.190 kb on + strandat 338.191 kb on - strandat 338.402 kb on + strand, within GFF2651at 338.402 kb on + strand, within GFF2651at 338.403 kb on - strand, within GFF2651at 338.403 kb on - strand, within GFF2651at 338.403 kb on - strand, within GFF2651at 338.403 kb on - strand, within GFF2651at 338.418 kb on - strand, within GFF2651at 338.432 kb on + strand, within GFF2651at 338.432 kb on + strand, within GFF2651at 338.432 kb on + strand, within GFF2651at 338.432 kb on + strand, within GFF2651at 338.433 kb on - strand, within GFF2651at 338.433 kb on - strand, within GFF2651at 338.433 kb on - strand, within GFF2651at 338.477 kb on + strand, within GFF2651at 338.477 kb on + strand, within GFF2651at 338.477 kb on + strand, within GFF2651at 338.477 kb on + strand, within GFF2651at 338.477 kb on + strand, within GFF2651at 338.478 kb on - strand, within GFF2651at 338.478 kb on - strand, within GFF2651at 338.478 kb on - strand, within GFF2651at 338.546 kb on + strand, within GFF2651at 338.564 kb on + strand, within GFF2651at 338.564 kb on + strand, within GFF2651at 338.564 kb on + strand, within GFF2651at 338.565 kb on - strand, within GFF2651at 338.565 kb on - strand, within GFF2651at 338.565 kb on - strand, within GFF2651at 338.565 kb on - strand, within GFF2651at 338.565 kb on - strand, within GFF2651at 338.565 kb on - strand, within GFF2651at 338.567 kb on + strand, within GFF2651at 338.567 kb on + strand, within GFF2651at 338.567 kb on + strand, within GFF2651at 338.567 kb on + strand, within GFF2651at 338.568 kb on - strand, within GFF2651at 338.568 kb on - strand, within GFF2651at 338.568 kb on - strand, within GFF2651at 338.645 kb on + strand, within GFF2651at 338.645 kb on + strand, within GFF2651at 338.645 kb on + strand, within GFF2651at 338.645 kb on + strand, within GFF2651at 338.645 kb on + strand, within GFF2651at 338.646 kb on - strand, within GFF2651at 338.646 kb on - strand, within GFF2651at 338.703 kb on + strand, within GFF2651at 338.787 kb on - strand, within GFF2651at 338.843 kb on + strand, within GFF2651at 338.844 kb on - strand, within GFF2651at 338.844 kb on - strand, within GFF2651at 338.844 kb on - strand, within GFF2651at 338.844 kb on - strand, within GFF2651at 338.844 kb on - strand, within GFF2651at 338.852 kb on + strand, within GFF2651at 338.852 kb on + strand, within GFF2651at 338.852 kb on + strand, within GFF2651at 338.852 kb on + strand, within GFF2651at 338.852 kb on + strand, within GFF2651at 338.853 kb on - strand, within GFF2651at 338.853 kb on - strand, within GFF2651at 338.853 kb on - strand, within GFF2651at 338.853 kb on - strand, within GFF2651at 338.853 kb on - strand, within GFF2651at 338.870 kb on - strand, within GFF2651at 338.936 kb on + strand, within GFF2651at 338.936 kb on + strand, within GFF2651at 338.936 kb on + strand, within GFF2651at 338.936 kb on + strand, within GFF2651at 338.936 kb on + strand, within GFF2651at 338.936 kb on + strand, within GFF2651at 338.936 kb on + strand, within GFF2651at 338.937 kb on - strand, within GFF2651at 338.937 kb on - strand, within GFF2651at 338.937 kb on - strand, within GFF2651at 338.963 kb on + strand, within GFF2651

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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335,352 + +0.0
335,352 + +0.2
335,352 + +0.1
335,353 - +0.0
335,353 - -0.8
335,412 + +0.1
335,412 + -0.3
335,413 - +0.0
335,413 - -1.1
335,413 - +0.6
335,486 - GFF2649 0.16 -0.8
335,486 - GFF2649 0.16 -1.1
335,762 - GFF2649 0.67 +0.5
335,762 - GFF2649 0.67 -1.1
335,791 + GFF2649 0.72 +0.8
335,791 + GFF2649 0.72 +0.5
335,791 + GFF2649 0.72 -1.2
335,791 + GFF2649 0.72 +1.0
335,791 + GFF2649 0.72 +0.4
335,792 - GFF2649 0.72 +0.7
335,840 + GFF2649 0.81 -0.1
335,841 - GFF2649 0.81 -0.6
335,927 - -0.7
335,927 - -1.0
335,927 - -0.4
335,927 - +0.9
336,003 + +0.7
336,003 + -0.9
336,086 + -0.1
336,087 - -1.0
336,118 - -0.2
336,137 - +0.2
336,322 + -1.0
336,322 + +0.0
336,322 + -0.6
336,322 + -0.1
336,322 + +0.2
336,323 - -1.8
336,323 - +0.4
336,323 - -1.4
336,323 - -0.5
336,350 - +1.0
336,350 - +0.4
336,350 - -2.2
336,350 - +0.9
336,425 + -0.1
336,425 + +0.6
336,425 + +1.6
336,426 - -0.4
336,447 - -0.4
336,447 - +0.5
336,447 - +0.0
336,506 + GFF2650 0.10 +2.8
336,506 + GFF2650 0.10 -1.1
336,506 + GFF2650 0.10 +0.2
336,506 + GFF2650 0.10 +0.7
336,506 + GFF2650 0.10 +1.2
336,506 + GFF2650 0.10 -0.6
336,506 + GFF2650 0.10 +0.2
336,507 - GFF2650 0.10 +0.0
336,507 - GFF2650 0.10 +0.3
336,507 - GFF2650 0.10 -0.4
336,511 - GFF2650 0.10 -0.4
336,511 - GFF2650 0.10 -0.2
336,578 + GFF2650 0.15 -0.2
336,579 - GFF2650 0.15 -0.7
336,583 + GFF2650 0.15 +1.0
336,583 + GFF2650 0.15 -0.5
336,583 + GFF2650 0.15 -0.4
336,583 + GFF2650 0.15 -0.5
336,583 + GFF2650 0.15 +0.1
336,583 + GFF2650 0.15 -0.3
336,584 - GFF2650 0.15 +0.0
336,584 - GFF2650 0.15 -0.2
336,584 - GFF2650 0.15 +0.3
336,593 + GFF2650 0.15 +1.3
336,593 + GFF2650 0.15 +0.2
336,594 - GFF2650 0.16 -0.2
336,594 - GFF2650 0.16 +0.4
336,629 + GFF2650 0.18 +0.1
336,654 + GFF2650 0.19 -0.8
336,655 - GFF2650 0.19 -0.2
336,767 + GFF2650 0.26 -0.0
336,767 + GFF2650 0.26 +0.5
336,767 + GFF2650 0.26 -0.3
336,768 - GFF2650 0.26 -0.5
336,768 - GFF2650 0.26 -1.9
336,768 - GFF2650 0.26 +0.1
336,768 - GFF2650 0.26 -0.9
336,768 - GFF2650 0.26 +0.4
336,817 + GFF2650 0.29 -1.6
336,817 + GFF2650 0.29 +0.2
336,817 + GFF2650 0.29 +0.2
336,817 + GFF2650 0.29 -0.7
336,817 + GFF2650 0.29 -1.0
336,818 - GFF2650 0.29 -0.2
336,866 + GFF2650 0.32 -0.6
336,866 + GFF2650 0.32 -0.2
336,869 + GFF2650 0.32 -1.4
336,869 + GFF2650 0.32 +0.9
336,869 + GFF2650 0.32 +0.6
336,869 + GFF2650 0.32 -0.2
336,870 - GFF2650 0.32 -0.8
336,870 - GFF2650 0.32 -0.6
336,870 - GFF2650 0.32 +1.0
336,870 - GFF2650 0.32 -1.2
336,870 - GFF2650 0.32 +0.0
336,870 - GFF2650 0.32 -0.4
336,870 - GFF2650 0.32 +0.1
336,870 - GFF2650 0.32 -0.1
336,873 - GFF2650 0.33 -1.0
336,873 - GFF2650 0.33 -1.0
336,924 + GFF2650 0.36 +2.0
336,924 + GFF2650 0.36 +0.5
336,924 + GFF2650 0.36 +0.3
336,942 - GFF2650 0.37 -0.3
337,023 + GFF2650 0.42 -0.1
337,023 + GFF2650 0.42 -1.6
337,023 + GFF2650 0.42 -1.7
337,023 + GFF2650 0.42 -1.4
337,023 + GFF2650 0.42 -0.1
337,024 - GFF2650 0.42 +1.0
337,214 + GFF2650 0.54 +0.5
337,214 + GFF2650 0.54 -2.6
337,214 + GFF2650 0.54 -0.5
337,215 - GFF2650 0.54 +0.0
337,656 + GFF2650 0.81 +0.9
337,656 + GFF2650 0.81 -0.2
337,657 - GFF2650 0.81 -0.9
337,657 - GFF2650 0.81 -1.3
337,657 - GFF2650 0.81 +0.1
337,697 + GFF2650 0.83 -0.6
337,697 + GFF2650 0.83 +0.7
337,697 + GFF2650 0.83 -0.4
337,697 + GFF2650 0.83 -0.2
337,697 + GFF2650 0.83 +0.1
337,697 + GFF2650 0.83 +0.4
337,697 + GFF2650 0.83 -0.2
337,698 - GFF2650 0.83 +0.5
337,752 - GFF2650 0.87 -0.2
337,752 - GFF2650 0.87 +0.5
337,752 - GFF2650 0.87 -2.5
337,787 + GFF2650 0.89 +0.5
337,787 + GFF2650 0.89 +0.2
337,787 + GFF2650 0.89 +0.2
337,787 + GFF2650 0.89 +2.3
337,788 - GFF2650 0.89 -1.8
337,788 - GFF2650 0.89 +0.2
337,788 - GFF2650 0.89 -1.1
337,788 - GFF2650 0.89 -0.9
337,788 - GFF2650 0.89 +0.2
337,963 + -0.4
337,963 + -0.7
337,963 + -0.2
337,963 + -0.1
337,968 - -0.7
337,972 + +1.4
338,081 - +1.7
338,190 + -0.0
338,191 - +1.5
338,402 + GFF2651 0.11 -1.9
338,402 + GFF2651 0.11 -0.5
338,403 - GFF2651 0.11 -0.1
338,403 - GFF2651 0.11 +0.1
338,403 - GFF2651 0.11 -0.6
338,403 - GFF2651 0.11 +0.8
338,418 - GFF2651 0.12 -0.6
338,432 + GFF2651 0.13 -0.8
338,432 + GFF2651 0.13 -1.0
338,432 + GFF2651 0.13 -0.9
338,432 + GFF2651 0.13 +0.2
338,433 - GFF2651 0.13 +0.1
338,433 - GFF2651 0.13 +0.5
338,433 - GFF2651 0.13 -0.7
338,477 + GFF2651 0.16 -0.6
338,477 + GFF2651 0.16 -1.0
338,477 + GFF2651 0.16 +0.0
338,477 + GFF2651 0.16 +0.1
338,477 + GFF2651 0.16 +0.9
338,478 - GFF2651 0.16 +0.2
338,478 - GFF2651 0.16 -0.6
338,478 - GFF2651 0.16 -0.3
338,546 + GFF2651 0.20 -0.2
338,564 + GFF2651 0.21 +0.6
338,564 + GFF2651 0.21 +1.8
338,564 + GFF2651 0.21 +0.4
338,565 - GFF2651 0.21 +0.5
338,565 - GFF2651 0.21 +0.1
338,565 - GFF2651 0.21 -0.3
338,565 - GFF2651 0.21 +1.3
338,565 - GFF2651 0.21 -0.0
338,565 - GFF2651 0.21 -0.5
338,567 + GFF2651 0.21 +0.4
338,567 + GFF2651 0.21 -0.0
338,567 + GFF2651 0.21 -0.9
338,567 + GFF2651 0.21 -1.1
338,568 - GFF2651 0.21 +0.1
338,568 - GFF2651 0.21 -0.3
338,568 - GFF2651 0.21 +0.4
338,645 + GFF2651 0.25 +0.1
338,645 + GFF2651 0.25 -1.1
338,645 + GFF2651 0.25 +0.1
338,645 + GFF2651 0.25 -0.9
338,645 + GFF2651 0.25 -0.1
338,646 - GFF2651 0.25 -1.6
338,646 - GFF2651 0.25 +0.3
338,703 + GFF2651 0.29 -1.3
338,787 - GFF2651 0.34 -1.0
338,843 + GFF2651 0.37 -0.3
338,844 - GFF2651 0.37 -0.0
338,844 - GFF2651 0.37 -0.1
338,844 - GFF2651 0.37 -0.5
338,844 - GFF2651 0.37 -0.5
338,844 - GFF2651 0.37 -1.8
338,852 + GFF2651 0.37 -0.3
338,852 + GFF2651 0.37 +1.6
338,852 + GFF2651 0.37 -0.1
338,852 + GFF2651 0.37 +0.0
338,852 + GFF2651 0.37 +0.4
338,853 - GFF2651 0.38 -0.2
338,853 - GFF2651 0.38 -0.1
338,853 - GFF2651 0.38 -1.0
338,853 - GFF2651 0.38 +0.6
338,853 - GFF2651 0.38 -1.0
338,870 - GFF2651 0.39 +0.1
338,936 + GFF2651 0.42 -0.4
338,936 + GFF2651 0.42 -0.5
338,936 + GFF2651 0.42 +0.5
338,936 + GFF2651 0.42 +1.5
338,936 + GFF2651 0.42 -0.1
338,936 + GFF2651 0.42 -0.6
338,936 + GFF2651 0.42 -0.7
338,937 - GFF2651 0.42 +0.4
338,937 - GFF2651 0.42 -0.4
338,937 - GFF2651 0.42 +0.0
338,963 + GFF2651 0.44 -0.1

Or see this region's nucleotide sequence