Strain Fitness in Xanthobacter sp. DMC5 around GFF2645

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2644 and GFF2645 are separated by 1 nucleotides GFF2644 - hypothetical protein, at 328,592 to 329,833 GFF2644 GFF2645 - hypothetical protein, at 329,835 to 330,080 GFF2645 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.072 kb on - strand, within GFF2644at 329.203 kb on + strand, within GFF2644at 329.215 kb on - strand, within GFF2644at 329.278 kb on + strand, within GFF2644at 329.318 kb on - strand, within GFF2644at 329.435 kb on + strand, within GFF2644at 329.436 kb on - strand, within GFF2644at 329.436 kb on - strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.553 kb on - strand, within GFF2644at 329.579 kb on + strand, within GFF2644at 329.579 kb on + strand, within GFF2644at 329.822 kb on + strandat 329.822 kb on + strandat 329.823 kb on - strandat 329.834 kb on + strandat 329.835 kb on - strandat 329.835 kb on - strandat 329.835 kb on - strandat 329.835 kb on - strandat 329.835 kb on - strandat 329.890 kb on + strand, within GFF2645at 329.890 kb on + strand, within GFF2645at 329.890 kb on + strand, within GFF2645at 329.891 kb on - strand, within GFF2645at 329.891 kb on - strand, within GFF2645at 329.891 kb on - strand, within GFF2645at 329.891 kb on - strand, within GFF2645at 329.928 kb on + strand, within GFF2645at 330.201 kb on - strandat 330.271 kb on + strandat 330.277 kb on + strandat 330.277 kb on + strandat 330.277 kb on + strandat 330.278 kb on - strandat 330.278 kb on - strandat 330.285 kb on + strandat 330.285 kb on + strandat 330.286 kb on - strandat 330.287 kb on + strandat 330.287 kb on + strandat 330.287 kb on + strandat 330.288 kb on - strandat 330.288 kb on - strandat 330.315 kb on + strandat 330.315 kb on + strandat 330.354 kb on - strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.546 kb on + strandat 330.565 kb on + strandat 330.566 kb on - strandat 330.566 kb on - strandat 330.568 kb on - strandat 330.629 kb on + strandat 330.629 kb on + strandat 330.630 kb on - strandat 330.630 kb on - strandat 330.751 kb on + strandat 330.949 kb on + strandat 330.949 kb on + strandat 330.949 kb on + strandat 331.024 kb on - strandat 331.062 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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328,877 + GFF2644 0.23 -0.7
328,877 + GFF2644 0.23 -0.2
328,877 + GFF2644 0.23 +0.6
328,877 + GFF2644 0.23 +0.2
328,878 - GFF2644 0.23 +0.1
328,878 - GFF2644 0.23 +0.4
328,878 - GFF2644 0.23 -0.2
328,878 - GFF2644 0.23 -0.1
328,878 - GFF2644 0.23 +0.3
328,878 - GFF2644 0.23 +0.1
328,878 - GFF2644 0.23 -0.4
328,878 - GFF2644 0.23 -0.6
329,071 + GFF2644 0.39 -0.2
329,071 + GFF2644 0.39 -1.6
329,071 + GFF2644 0.39 -0.8
329,072 - GFF2644 0.39 -1.0
329,203 + GFF2644 0.49 -0.1
329,215 - GFF2644 0.50 -0.8
329,278 + GFF2644 0.55 +0.7
329,318 - GFF2644 0.58 -0.9
329,435 + GFF2644 0.68 -0.6
329,436 - GFF2644 0.68 -0.2
329,436 - GFF2644 0.68 -0.6
329,552 + GFF2644 0.77 +1.0
329,552 + GFF2644 0.77 +0.3
329,552 + GFF2644 0.77 +1.0
329,553 - GFF2644 0.77 +0.0
329,579 + GFF2644 0.79 +0.4
329,579 + GFF2644 0.79 +0.2
329,822 + +0.2
329,822 + +0.2
329,823 - +1.0
329,834 + -0.3
329,835 - +1.0
329,835 - +0.3
329,835 - -1.6
329,835 - -0.8
329,835 - -1.0
329,890 + GFF2645 0.22 +0.3
329,890 + GFF2645 0.22 +0.6
329,890 + GFF2645 0.22 -0.4
329,891 - GFF2645 0.23 -0.8
329,891 - GFF2645 0.23 -0.4
329,891 - GFF2645 0.23 +0.5
329,891 - GFF2645 0.23 +1.0
329,928 + GFF2645 0.38 -0.2
330,201 - +0.3
330,271 + +0.6
330,277 + +0.7
330,277 + -1.4
330,277 + +0.8
330,278 - -0.7
330,278 - -1.2
330,285 + +0.2
330,285 + -0.4
330,286 - +1.2
330,287 + +1.6
330,287 + -1.3
330,287 + -0.2
330,288 - -1.1
330,288 - -0.6
330,315 + -0.8
330,315 + -0.5
330,354 - -0.4
330,503 + +0.1
330,503 + +1.7
330,503 + -0.2
330,503 + -0.4
330,504 - -0.8
330,504 - +0.3
330,504 - +1.2
330,504 - -0.3
330,504 - -0.5
330,504 - -0.7
330,504 - -0.7
330,504 - +0.1
330,546 + -0.4
330,565 + -0.7
330,566 - -0.7
330,566 - +0.2
330,568 - -0.2
330,629 + -0.7
330,629 + -1.2
330,630 - +0.3
330,630 - -0.3
330,751 + -0.1
330,949 + -0.1
330,949 + -0.1
330,949 + -2.1
331,024 - -1.1
331,062 - +2.0

Or see this region's nucleotide sequence