Strain Fitness in Xanthobacter sp. DMC5 around GFF2618

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2617 and GFF2618 are separated by 23 nucleotidesGFF2618 and GFF2619 are separated by 5 nucleotidesGFF2619 and GFF2620 are separated by 387 nucleotides GFF2617 - hypothetical protein, at 298,856 to 300,595 GFF2617 GFF2618 - Conjugal transfer protein TraG, at 300,619 to 302,598 GFF2618 GFF2619 - hypothetical protein, at 302,604 to 303,029 GFF2619 GFF2620 - hypothetical protein, at 303,417 to 304,076 GFF2620 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -2 -1 0 1 2at 299.864 kb on + strand, within GFF2617at 299.864 kb on + strand, within GFF2617at 299.864 kb on + strand, within GFF2617at 299.865 kb on - strand, within GFF2617at 299.865 kb on - strand, within GFF2617at 299.865 kb on - strand, within GFF2617at 299.896 kb on + strand, within GFF2617at 299.896 kb on + strand, within GFF2617at 299.897 kb on - strand, within GFF2617at 299.952 kb on - strand, within GFF2617at 300.224 kb on - strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.398 kb on + strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.399 kb on - strand, within GFF2617at 300.413 kb on + strand, within GFF2617at 300.772 kb on + strandat 300.772 kb on + strandat 300.802 kb on + strandat 300.802 kb on + strandat 300.803 kb on - strandat 300.803 kb on - strandat 300.803 kb on - strandat 300.817 kb on + strand, within GFF2618at 300.817 kb on + strand, within GFF2618at 300.818 kb on - strand, within GFF2618at 300.832 kb on + strand, within GFF2618at 300.938 kb on - strand, within GFF2618at 300.938 kb on - strand, within GFF2618at 300.938 kb on - strand, within GFF2618at 300.938 kb on - strand, within GFF2618at 300.938 kb on - strand, within GFF2618at 301.031 kb on - strand, within GFF2618at 301.031 kb on - strand, within GFF2618at 301.243 kb on + strand, within GFF2618at 301.243 kb on + strand, within GFF2618at 301.243 kb on + strand, within GFF2618at 301.244 kb on - strand, within GFF2618at 301.244 kb on - strand, within GFF2618at 301.244 kb on - strand, within GFF2618at 301.402 kb on + strand, within GFF2618at 301.402 kb on + strand, within GFF2618at 301.402 kb on + strand, within GFF2618at 301.402 kb on + strand, within GFF2618at 301.402 kb on + strand, within GFF2618at 301.402 kb on + strand, within GFF2618at 301.403 kb on - strand, within GFF2618at 301.403 kb on - strand, within GFF2618at 301.403 kb on - strand, within GFF2618at 301.599 kb on + strand, within GFF2618at 301.599 kb on + strand, within GFF2618at 301.599 kb on + strand, within GFF2618at 301.599 kb on + strand, within GFF2618at 301.599 kb on + strand, within GFF2618at 301.600 kb on - strand, within GFF2618at 301.600 kb on - strand, within GFF2618at 301.600 kb on - strand, within GFF2618at 301.618 kb on + strand, within GFF2618at 301.619 kb on - strand, within GFF2618at 301.705 kb on + strand, within GFF2618at 301.705 kb on + strand, within GFF2618at 301.706 kb on - strand, within GFF2618at 301.706 kb on - strand, within GFF2618at 301.900 kb on + strand, within GFF2618at 301.954 kb on + strand, within GFF2618at 301.954 kb on + strand, within GFF2618at 301.955 kb on - strand, within GFF2618at 301.955 kb on - strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.121 kb on + strand, within GFF2618at 302.121 kb on + strand, within GFF2618at 302.121 kb on + strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.245 kb on + strand, within GFF2618at 302.245 kb on + strand, within GFF2618at 302.245 kb on + strand, within GFF2618at 302.245 kb on + strand, within GFF2618at 302.246 kb on - strand, within GFF2618at 302.246 kb on - strand, within GFF2618at 302.246 kb on - strand, within GFF2618at 302.246 kb on - strand, within GFF2618at 302.248 kb on + strand, within GFF2618at 302.248 kb on + strand, within GFF2618at 302.248 kb on + strand, within GFF2618at 302.249 kb on - strand, within GFF2618at 302.529 kb on + strandat 302.529 kb on + strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.640 kb on + strandat 302.641 kb on - strandat 302.641 kb on - strandat 302.641 kb on - strandat 302.676 kb on + strand, within GFF2619at 302.676 kb on + strand, within GFF2619at 302.677 kb on - strand, within GFF2619at 302.677 kb on - strand, within GFF2619at 302.677 kb on - strand, within GFF2619at 302.835 kb on + strand, within GFF2619at 302.860 kb on + strand, within GFF2619at 302.861 kb on - strand, within GFF2619at 302.861 kb on - strand, within GFF2619at 302.937 kb on + strand, within GFF2619at 302.937 kb on + strand, within GFF2619at 302.937 kb on + strand, within GFF2619at 302.937 kb on + strand, within GFF2619at 302.938 kb on - strand, within GFF2619at 303.028 kb on - strandat 303.028 kb on - strandat 303.034 kb on + strandat 303.035 kb on - strandat 303.253 kb on + strandat 303.258 kb on + strandat 303.269 kb on + strandat 303.269 kb on + strandat 303.270 kb on - strandat 303.270 kb on - strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.281 kb on - strandat 303.281 kb on - strandat 303.293 kb on + strandat 303.293 kb on + strandat 303.293 kb on + strandat 303.294 kb on - strandat 303.294 kb on - strandat 303.294 kb on - strandat 303.413 kb on + strandat 303.452 kb on + strandat 303.453 kb on - strandat 303.453 kb on - strandat 303.453 kb on - strandat 303.460 kb on - strandat 303.574 kb on + strand, within GFF2620at 303.574 kb on + strand, within GFF2620at 303.574 kb on + strand, within GFF2620at 303.574 kb on + strand, within GFF2620at 303.575 kb on - strand, within GFF2620at 303.575 kb on - strand, within GFF2620

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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299,864 + GFF2617 0.58 +0.7
299,864 + GFF2617 0.58 -0.6
299,864 + GFF2617 0.58 -0.5
299,865 - GFF2617 0.58 +0.3
299,865 - GFF2617 0.58 -1.4
299,865 - GFF2617 0.58 +0.2
299,896 + GFF2617 0.60 +0.4
299,896 + GFF2617 0.60 +0.7
299,897 - GFF2617 0.60 -0.8
299,952 - GFF2617 0.63 -0.3
300,224 - GFF2617 0.79 -0.1
300,398 + GFF2617 0.89 -1.3
300,398 + GFF2617 0.89 -0.8
300,398 + GFF2617 0.89 -1.5
300,398 + GFF2617 0.89 +0.3
300,398 + GFF2617 0.89 +0.8
300,398 + GFF2617 0.89 +0.8
300,398 + GFF2617 0.89 -0.1
300,398 + GFF2617 0.89 +2.0
300,398 + GFF2617 0.89 -0.2
300,398 + GFF2617 0.89 +0.1
300,399 - GFF2617 0.89 +1.4
300,399 - GFF2617 0.89 +1.2
300,399 - GFF2617 0.89 +0.4
300,399 - GFF2617 0.89 +0.4
300,399 - GFF2617 0.89 +0.1
300,399 - GFF2617 0.89 -0.2
300,399 - GFF2617 0.89 -0.8
300,399 - GFF2617 0.89 +0.3
300,399 - GFF2617 0.89 +0.0
300,399 - GFF2617 0.89 -0.6
300,399 - GFF2617 0.89 +0.9
300,399 - GFF2617 0.89 +0.9
300,413 + GFF2617 0.89 -0.7
300,772 + +0.8
300,772 + -0.5
300,802 + +0.0
300,802 + -0.8
300,803 - +0.0
300,803 - +0.0
300,803 - -0.3
300,817 + GFF2618 0.10 +0.2
300,817 + GFF2618 0.10 +0.3
300,818 - GFF2618 0.10 -1.3
300,832 + GFF2618 0.11 -0.5
300,938 - GFF2618 0.16 +1.4
300,938 - GFF2618 0.16 +1.0
300,938 - GFF2618 0.16 -1.6
300,938 - GFF2618 0.16 +0.8
300,938 - GFF2618 0.16 -0.1
301,031 - GFF2618 0.21 -0.3
301,031 - GFF2618 0.21 +0.3
301,243 + GFF2618 0.32 +1.3
301,243 + GFF2618 0.32 +0.3
301,243 + GFF2618 0.32 +0.9
301,244 - GFF2618 0.32 -0.4
301,244 - GFF2618 0.32 +1.1
301,244 - GFF2618 0.32 +0.6
301,402 + GFF2618 0.40 +0.4
301,402 + GFF2618 0.40 +1.5
301,402 + GFF2618 0.40 +1.3
301,402 + GFF2618 0.40 +0.4
301,402 + GFF2618 0.40 +0.1
301,402 + GFF2618 0.40 +0.3
301,403 - GFF2618 0.40 +0.0
301,403 - GFF2618 0.40 -0.4
301,403 - GFF2618 0.40 +0.7
301,599 + GFF2618 0.49 +0.1
301,599 + GFF2618 0.49 -2.2
301,599 + GFF2618 0.49 -0.0
301,599 + GFF2618 0.49 -0.1
301,599 + GFF2618 0.49 -0.1
301,600 - GFF2618 0.50 +1.0
301,600 - GFF2618 0.50 +0.7
301,600 - GFF2618 0.50 +0.0
301,618 + GFF2618 0.50 +0.2
301,619 - GFF2618 0.51 -0.3
301,705 + GFF2618 0.55 +0.6
301,705 + GFF2618 0.55 -1.2
301,706 - GFF2618 0.55 +1.2
301,706 - GFF2618 0.55 +0.4
301,900 + GFF2618 0.65 -0.1
301,954 + GFF2618 0.67 +1.0
301,954 + GFF2618 0.67 +0.2
301,955 - GFF2618 0.67 -0.3
301,955 - GFF2618 0.67 -0.1
302,083 + GFF2618 0.74 +0.8
302,083 + GFF2618 0.74 +0.1
302,083 + GFF2618 0.74 +0.2
302,083 + GFF2618 0.74 -0.1
302,083 + GFF2618 0.74 +0.1
302,121 + GFF2618 0.76 -0.7
302,121 + GFF2618 0.76 -1.0
302,121 + GFF2618 0.76 +0.5
302,122 - GFF2618 0.76 -0.8
302,122 - GFF2618 0.76 +0.4
302,122 - GFF2618 0.76 +0.2
302,122 - GFF2618 0.76 -0.3
302,122 - GFF2618 0.76 -0.8
302,122 - GFF2618 0.76 +0.1
302,245 + GFF2618 0.82 -1.2
302,245 + GFF2618 0.82 -0.1
302,245 + GFF2618 0.82 -1.4
302,245 + GFF2618 0.82 -0.7
302,246 - GFF2618 0.82 +0.2
302,246 - GFF2618 0.82 +0.4
302,246 - GFF2618 0.82 -0.6
302,246 - GFF2618 0.82 -0.6
302,248 + GFF2618 0.82 +1.3
302,248 + GFF2618 0.82 +0.2
302,248 + GFF2618 0.82 -0.3
302,249 - GFF2618 0.82 +0.1
302,529 + -0.1
302,529 + +0.7
302,530 - +1.3
302,530 - +0.8
302,530 - -0.3
302,530 - +0.6
302,530 - +0.1
302,530 - -0.4
302,640 + -0.4
302,641 - -0.9
302,641 - -0.3
302,641 - -0.5
302,676 + GFF2619 0.17 -0.6
302,676 + GFF2619 0.17 -0.8
302,677 - GFF2619 0.17 -0.6
302,677 - GFF2619 0.17 -0.6
302,677 - GFF2619 0.17 +0.0
302,835 + GFF2619 0.54 -0.7
302,860 + GFF2619 0.60 -0.4
302,861 - GFF2619 0.60 +0.4
302,861 - GFF2619 0.60 +0.4
302,937 + GFF2619 0.78 +0.9
302,937 + GFF2619 0.78 -0.5
302,937 + GFF2619 0.78 +0.1
302,937 + GFF2619 0.78 +0.1
302,938 - GFF2619 0.78 -0.8
303,028 - -0.5
303,028 - +0.4
303,034 + -0.3
303,035 - +1.2
303,253 + -0.1
303,258 + -0.1
303,269 + -0.3
303,269 + -0.3
303,270 - -0.2
303,270 - +0.8
303,280 + -0.2
303,280 + -0.3
303,280 + +1.5
303,280 + -0.1
303,280 + -1.1
303,280 + -0.3
303,281 - +0.7
303,281 - +1.6
303,293 + -0.4
303,293 + +2.0
303,293 + +0.7
303,294 - +0.7
303,294 - -1.1
303,294 - +0.1
303,413 + +0.3
303,452 + -0.0
303,453 - -0.0
303,453 - +1.5
303,453 - -0.8
303,460 - +0.4
303,574 + GFF2620 0.24 -0.2
303,574 + GFF2620 0.24 +0.4
303,574 + GFF2620 0.24 +0.0
303,574 + GFF2620 0.24 +0.2
303,575 - GFF2620 0.24 -0.7
303,575 - GFF2620 0.24 +0.3

Or see this region's nucleotide sequence