Strain Fitness in Xanthobacter sp. DMC5 around GFF2579

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2578 and GFF2579 are separated by 178 nucleotidesGFF2579 and GFF2580 are separated by 60 nucleotides GFF2578 - Solute-binding protein, at 257,877 to 258,926 GFF2578 GFF2579 - Long-chain-fatty-acid--CoA ligase, at 259,105 to 260,634 GFF2579 GFF2580 - hypothetical protein, at 260,695 to 262,065 GFF2580 Position (kb) 259 260 261Strain fitness (log2 ratio) -2 -1 0 1 2at 258.181 kb on + strand, within GFF2578at 258.181 kb on + strand, within GFF2578at 258.181 kb on + strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.484 kb on + strand, within GFF2578at 258.485 kb on - strand, within GFF2578at 258.485 kb on - strand, within GFF2578at 258.538 kb on + strand, within GFF2578at 258.538 kb on + strand, within GFF2578at 258.538 kb on + strand, within GFF2578at 258.539 kb on - strand, within GFF2578at 258.539 kb on - strand, within GFF2578at 258.539 kb on - strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.570 kb on - strand, within GFF2578at 258.570 kb on - strand, within GFF2578at 258.570 kb on - strand, within GFF2578at 258.570 kb on - strand, within GFF2578at 258.598 kb on + strand, within GFF2578at 258.598 kb on + strand, within GFF2578at 258.599 kb on - strand, within GFF2578at 258.610 kb on + strand, within GFF2578at 258.611 kb on - strand, within GFF2578at 258.685 kb on + strand, within GFF2578at 258.685 kb on + strand, within GFF2578at 258.685 kb on + strand, within GFF2578at 258.686 kb on - strand, within GFF2578at 258.686 kb on - strand, within GFF2578at 258.686 kb on - strand, within GFF2578at 258.686 kb on - strand, within GFF2578at 259.026 kb on + strandat 259.026 kb on + strandat 259.026 kb on + strandat 259.026 kb on + strandat 259.026 kb on + strandat 259.027 kb on - strandat 259.027 kb on - strandat 259.027 kb on - strandat 259.116 kb on + strandat 259.117 kb on - strandat 259.121 kb on + strandat 259.133 kb on + strandat 259.134 kb on - strandat 259.397 kb on + strand, within GFF2579at 259.398 kb on - strand, within GFF2579at 259.454 kb on + strand, within GFF2579at 259.541 kb on + strand, within GFF2579at 259.541 kb on + strand, within GFF2579at 259.541 kb on + strand, within GFF2579at 259.630 kb on + strand, within GFF2579at 259.630 kb on + strand, within GFF2579at 259.631 kb on - strand, within GFF2579at 259.652 kb on + strand, within GFF2579at 259.653 kb on - strand, within GFF2579at 259.685 kb on + strand, within GFF2579at 259.685 kb on + strand, within GFF2579at 259.702 kb on - strand, within GFF2579at 259.865 kb on + strand, within GFF2579at 259.866 kb on - strand, within GFF2579at 259.937 kb on - strand, within GFF2579at 260.061 kb on - strand, within GFF2579at 260.144 kb on + strand, within GFF2579at 260.144 kb on + strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.194 kb on - strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.352 kb on - strand, within GFF2579at 260.352 kb on - strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.424 kb on - strand, within GFF2579at 260.540 kb on + strandat 260.540 kb on + strandat 260.540 kb on + strandat 260.541 kb on - strandat 260.541 kb on - strandat 260.541 kb on - strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.823 kb on - strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.829 kb on - strandat 260.829 kb on - strandat 260.978 kb on + strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 261.272 kb on + strand, within GFF2580at 261.272 kb on + strand, within GFF2580at 261.273 kb on - strand, within GFF2580at 261.273 kb on - strand, within GFF2580at 261.419 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.491 kb on + strand, within GFF2580at 261.491 kb on + strand, within GFF2580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
258,181 + GFF2578 0.29 -0.0
258,181 + GFF2578 0.29 +0.4
258,181 + GFF2578 0.29 -0.7
258,182 - GFF2578 0.29 -0.5
258,182 - GFF2578 0.29 +0.5
258,182 - GFF2578 0.29 +0.6
258,182 - GFF2578 0.29 +0.8
258,182 - GFF2578 0.29 -1.6
258,295 + GFF2578 0.40 -0.3
258,295 + GFF2578 0.40 +0.6
258,295 + GFF2578 0.40 +0.6
258,295 + GFF2578 0.40 +0.6
258,295 + GFF2578 0.40 +1.0
258,296 - GFF2578 0.40 -0.4
258,296 - GFF2578 0.40 -0.0
258,296 - GFF2578 0.40 -1.3
258,296 - GFF2578 0.40 +0.0
258,484 + GFF2578 0.58 -0.5
258,485 - GFF2578 0.58 -0.2
258,485 - GFF2578 0.58 -0.0
258,538 + GFF2578 0.63 +0.8
258,538 + GFF2578 0.63 -0.8
258,538 + GFF2578 0.63 -0.0
258,539 - GFF2578 0.63 -0.1
258,539 - GFF2578 0.63 -0.0
258,539 - GFF2578 0.63 -0.5
258,569 + GFF2578 0.66 -0.3
258,569 + GFF2578 0.66 +0.7
258,569 + GFF2578 0.66 -0.3
258,569 + GFF2578 0.66 -0.1
258,569 + GFF2578 0.66 +0.3
258,569 + GFF2578 0.66 +0.5
258,570 - GFF2578 0.66 +0.4
258,570 - GFF2578 0.66 -0.4
258,570 - GFF2578 0.66 +1.7
258,570 - GFF2578 0.66 -0.7
258,598 + GFF2578 0.69 -0.3
258,598 + GFF2578 0.69 -1.4
258,599 - GFF2578 0.69 -0.0
258,610 + GFF2578 0.70 -0.9
258,611 - GFF2578 0.70 +0.5
258,685 + GFF2578 0.77 -0.3
258,685 + GFF2578 0.77 -0.1
258,685 + GFF2578 0.77 -0.2
258,686 - GFF2578 0.77 -0.3
258,686 - GFF2578 0.77 +0.7
258,686 - GFF2578 0.77 +0.3
258,686 - GFF2578 0.77 -1.3
259,026 + -1.2
259,026 + -0.0
259,026 + -0.0
259,026 + +2.3
259,026 + +0.9
259,027 - -0.1
259,027 - -0.6
259,027 - +0.8
259,116 + -0.4
259,117 - +1.1
259,121 + -0.1
259,133 + +1.3
259,134 - +0.7
259,397 + GFF2579 0.19 -0.9
259,398 - GFF2579 0.19 +1.5
259,454 + GFF2579 0.23 -0.3
259,541 + GFF2579 0.28 -0.1
259,541 + GFF2579 0.28 +0.1
259,541 + GFF2579 0.28 +0.3
259,630 + GFF2579 0.34 +0.7
259,630 + GFF2579 0.34 +0.2
259,631 - GFF2579 0.34 -0.8
259,652 + GFF2579 0.36 +1.4
259,653 - GFF2579 0.36 -0.1
259,685 + GFF2579 0.38 +0.4
259,685 + GFF2579 0.38 -0.6
259,702 - GFF2579 0.39 -0.9
259,865 + GFF2579 0.50 -0.8
259,866 - GFF2579 0.50 +0.1
259,937 - GFF2579 0.54 -1.3
260,061 - GFF2579 0.62 +0.2
260,144 + GFF2579 0.68 -1.1
260,144 + GFF2579 0.68 -2.5
260,145 - GFF2579 0.68 -0.3
260,145 - GFF2579 0.68 +0.1
260,145 - GFF2579 0.68 +0.2
260,194 - GFF2579 0.71 +0.1
260,351 + GFF2579 0.81 -1.1
260,351 + GFF2579 0.81 +0.4
260,351 + GFF2579 0.81 +0.1
260,352 - GFF2579 0.82 +1.0
260,352 - GFF2579 0.82 -0.2
260,370 + GFF2579 0.83 +0.5
260,370 + GFF2579 0.83 +1.4
260,370 + GFF2579 0.83 -0.8
260,370 + GFF2579 0.83 +0.7
260,371 - GFF2579 0.83 -0.3
260,371 - GFF2579 0.83 -0.3
260,371 - GFF2579 0.83 +0.4
260,372 + GFF2579 0.83 -0.1
260,372 + GFF2579 0.83 +0.7
260,372 + GFF2579 0.83 -0.6
260,423 + GFF2579 0.86 -0.1
260,423 + GFF2579 0.86 +0.3
260,423 + GFF2579 0.86 +0.1
260,424 - GFF2579 0.86 -0.0
260,540 + -0.4
260,540 + +0.1
260,540 + +0.5
260,541 - -1.0
260,541 - +0.5
260,541 - -2.2
260,822 + -0.3
260,822 + -0.0
260,823 - -0.0
260,828 + -0.9
260,828 + -0.2
260,828 + +0.3
260,828 + -0.3
260,828 + -0.6
260,828 + +0.3
260,829 - -0.2
260,829 - -0.2
260,978 + GFF2580 0.21 -0.3
260,979 - GFF2580 0.21 -0.6
260,979 - GFF2580 0.21 -0.3
260,979 - GFF2580 0.21 -0.8
260,979 - GFF2580 0.21 -1.0
260,982 - GFF2580 0.21 -0.0
260,982 - GFF2580 0.21 -0.3
260,982 - GFF2580 0.21 +1.2
260,982 - GFF2580 0.21 -1.2
261,272 + GFF2580 0.42 -0.5
261,272 + GFF2580 0.42 +0.4
261,273 - GFF2580 0.42 -0.7
261,273 - GFF2580 0.42 -1.0
261,419 + GFF2580 0.53 -0.5
261,481 + GFF2580 0.57 -1.0
261,481 + GFF2580 0.57 +1.3
261,481 + GFF2580 0.57 -1.4
261,491 + GFF2580 0.58 -0.5
261,491 + GFF2580 0.58 +0.2

Or see this region's nucleotide sequence