Strain Fitness in Xanthobacter sp. DMC5 around GFF2531

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2530 and GFF2531 are separated by 273 nucleotidesGFF2531 and GFF2532 are separated by 210 nucleotides GFF2530 - hypothetical protein, at 198,551 to 199,567 GFF2530 GFF2531 - hypothetical protein, at 199,841 to 200,365 GFF2531 GFF2532 - hypothetical protein, at 200,576 to 202,090 GFF2532 Position (kb) 199 200 201Strain fitness (log2 ratio) -1 0 1at 198.889 kb on - strand, within GFF2530at 198.889 kb on - strand, within GFF2530at 198.889 kb on - strand, within GFF2530at 198.889 kb on - strand, within GFF2530at 198.889 kb on - strand, within GFF2530at 198.971 kb on + strand, within GFF2530at 198.971 kb on + strand, within GFF2530at 198.971 kb on + strand, within GFF2530at 198.972 kb on - strand, within GFF2530at 198.972 kb on - strand, within GFF2530at 198.972 kb on - strand, within GFF2530at 198.972 kb on - strand, within GFF2530at 199.112 kb on + strand, within GFF2530at 199.112 kb on + strand, within GFF2530at 199.112 kb on + strand, within GFF2530at 199.112 kb on + strand, within GFF2530at 199.112 kb on + strand, within GFF2530at 199.113 kb on - strand, within GFF2530at 199.113 kb on - strand, within GFF2530at 199.113 kb on - strand, within GFF2530at 199.113 kb on - strand, within GFF2530at 199.113 kb on - strand, within GFF2530at 199.113 kb on - strand, within GFF2530at 199.247 kb on + strand, within GFF2530at 199.248 kb on - strand, within GFF2530at 199.248 kb on - strand, within GFF2530at 199.263 kb on - strand, within GFF2530at 199.263 kb on - strand, within GFF2530at 199.263 kb on - strand, within GFF2530at 199.263 kb on - strand, within GFF2530at 199.263 kb on - strand, within GFF2530at 199.263 kb on - strand, within GFF2530at 199.337 kb on + strand, within GFF2530at 199.337 kb on + strand, within GFF2530at 199.338 kb on - strand, within GFF2530at 199.493 kb on + strandat 199.566 kb on - strandat 199.566 kb on - strandat 199.578 kb on + strandat 199.578 kb on + strandat 199.579 kb on - strandat 199.579 kb on - strandat 199.774 kb on + strandat 199.774 kb on + strandat 199.800 kb on + strandat 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.162 kb on + strand, within GFF2531at 200.163 kb on - strand, within GFF2531at 200.163 kb on - strand, within GFF2531at 200.193 kb on - strand, within GFF2531at 200.193 kb on - strand, within GFF2531at 200.305 kb on - strand, within GFF2531at 200.361 kb on - strandat 200.487 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.777 kb on + strand, within GFF2532at 201.026 kb on + strand, within GFF2532at 201.026 kb on + strand, within GFF2532at 201.026 kb on + strand, within GFF2532at 201.027 kb on - strand, within GFF2532at 201.315 kb on - strand, within GFF2532at 201.327 kb on - strand, within GFF2532

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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198,889 - GFF2530 0.33 +0.1
198,889 - GFF2530 0.33 -0.4
198,889 - GFF2530 0.33 +0.3
198,889 - GFF2530 0.33 -0.3
198,889 - GFF2530 0.33 -1.3
198,971 + GFF2530 0.41 +0.7
198,971 + GFF2530 0.41 -0.0
198,971 + GFF2530 0.41 -0.2
198,972 - GFF2530 0.41 +0.5
198,972 - GFF2530 0.41 +0.1
198,972 - GFF2530 0.41 -0.6
198,972 - GFF2530 0.41 +0.1
199,112 + GFF2530 0.55 +0.3
199,112 + GFF2530 0.55 -0.0
199,112 + GFF2530 0.55 -0.2
199,112 + GFF2530 0.55 +1.3
199,112 + GFF2530 0.55 -0.2
199,113 - GFF2530 0.55 +0.8
199,113 - GFF2530 0.55 +0.4
199,113 - GFF2530 0.55 +1.2
199,113 - GFF2530 0.55 +1.0
199,113 - GFF2530 0.55 +0.6
199,113 - GFF2530 0.55 -0.4
199,247 + GFF2530 0.68 +0.5
199,248 - GFF2530 0.69 +0.5
199,248 - GFF2530 0.69 -0.4
199,263 - GFF2530 0.70 +1.0
199,263 - GFF2530 0.70 -0.9
199,263 - GFF2530 0.70 -0.0
199,263 - GFF2530 0.70 -0.0
199,263 - GFF2530 0.70 -0.0
199,263 - GFF2530 0.70 +1.7
199,337 + GFF2530 0.77 +1.0
199,337 + GFF2530 0.77 +0.5
199,338 - GFF2530 0.77 +1.0
199,493 + -1.0
199,566 - +1.6
199,566 - +0.1
199,578 + +0.7
199,578 + -0.7
199,579 - +0.3
199,579 - -1.2
199,774 + +0.3
199,774 + +0.2
199,800 + -0.2
200,024 + GFF2531 0.35 -0.0
200,024 + GFF2531 0.35 -0.3
200,024 + GFF2531 0.35 +0.2
200,024 + GFF2531 0.35 -0.9
200,024 + GFF2531 0.35 +0.4
200,024 + GFF2531 0.35 -0.1
200,024 + GFF2531 0.35 -0.8
200,025 - GFF2531 0.35 -0.4
200,025 - GFF2531 0.35 -0.2
200,025 - GFF2531 0.35 -0.0
200,025 - GFF2531 0.35 -0.0
200,025 - GFF2531 0.35 +0.5
200,025 - GFF2531 0.35 +0.1
200,025 - GFF2531 0.35 -0.4
200,025 - GFF2531 0.35 +0.7
200,162 + GFF2531 0.61 -0.1
200,163 - GFF2531 0.61 -0.3
200,163 - GFF2531 0.61 +0.0
200,193 - GFF2531 0.67 -0.4
200,193 - GFF2531 0.67 +0.1
200,305 - GFF2531 0.88 +0.5
200,361 - +0.4
200,487 + +1.0
200,639 + +0.4
200,639 + +0.2
200,639 + +0.4
200,639 + +1.4
200,639 + +0.1
200,639 + +0.8
200,639 + -0.0
200,639 + +0.2
200,640 - +1.2
200,640 - +0.8
200,640 - +0.2
200,640 - +0.6
200,640 - +0.2
200,640 - -0.1
200,640 - +1.2
200,640 - +0.6
200,640 - -0.5
200,777 + GFF2532 0.13 -0.0
201,026 + GFF2532 0.30 +0.6
201,026 + GFF2532 0.30 -0.7
201,026 + GFF2532 0.30 -1.0
201,027 - GFF2532 0.30 -0.8
201,315 - GFF2532 0.49 +0.9
201,327 - GFF2532 0.50 -1.2

Or see this region's nucleotide sequence