Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2528 and GFF2529 are separated by 207 nucleotides GFF2529 and GFF2530 are separated by 357 nucleotides
GFF2528 - hypothetical protein, at 196,091 to 197,131
GFF2528
GFF2529 - Transcriptional repressor IclR, at 197,339 to 198,193
GFF2529
GFF2530 - hypothetical protein, at 198,551 to 199,567
GFF2530
Position (kb) 197
198
199 Strain fitness (log2 ratio) -1
0
1 at 196.653 kb on + strand, within GFF2528 at 196.653 kb on + strand, within GFF2528 at 196.653 kb on + strand, within GFF2528 at 196.653 kb on + strand, within GFF2528 at 196.654 kb on - strand, within GFF2528 at 196.654 kb on - strand, within GFF2528 at 196.654 kb on - strand, within GFF2528 at 196.654 kb on - strand, within GFF2528 at 196.654 kb on - strand, within GFF2528 at 196.698 kb on + strand, within GFF2528 at 196.698 kb on + strand, within GFF2528 at 196.803 kb on + strand, within GFF2528 at 196.804 kb on - strand, within GFF2528 at 196.809 kb on + strand, within GFF2528 at 196.923 kb on + strand, within GFF2528 at 196.923 kb on + strand, within GFF2528 at 196.923 kb on + strand, within GFF2528 at 196.923 kb on + strand, within GFF2528 at 196.924 kb on - strand, within GFF2528 at 196.924 kb on - strand, within GFF2528 at 196.924 kb on - strand, within GFF2528 at 197.116 kb on - strand at 197.222 kb on + strand at 197.222 kb on + strand at 197.222 kb on + strand at 197.223 kb on - strand at 197.226 kb on + strand at 197.303 kb on - strand at 197.303 kb on - strand at 197.303 kb on - strand at 197.584 kb on - strand, within GFF2529 at 197.624 kb on + strand, within GFF2529 at 197.625 kb on - strand, within GFF2529 at 197.882 kb on + strand, within GFF2529 at 198.176 kb on + strand at 198.176 kb on + strand at 198.246 kb on - strand at 198.294 kb on + strand at 198.295 kb on - strand at 198.313 kb on + strand at 198.338 kb on + strand at 198.373 kb on - strand at 198.417 kb on + strand at 198.424 kb on + strand at 198.889 kb on - strand, within GFF2530 at 198.889 kb on - strand, within GFF2530 at 198.889 kb on - strand, within GFF2530 at 198.889 kb on - strand, within GFF2530 at 198.889 kb on - strand, within GFF2530 at 198.971 kb on + strand, within GFF2530 at 198.971 kb on + strand, within GFF2530 at 198.971 kb on + strand, within GFF2530 at 198.972 kb on - strand, within GFF2530 at 198.972 kb on - strand, within GFF2530 at 198.972 kb on - strand, within GFF2530 at 198.972 kb on - strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 196,653 + GFF2528 0.54 +0.4 196,653 + GFF2528 0.54 -0.1 196,653 + GFF2528 0.54 +0.8 196,653 + GFF2528 0.54 -0.0 196,654 - GFF2528 0.54 +0.5 196,654 - GFF2528 0.54 +0.1 196,654 - GFF2528 0.54 +0.3 196,654 - GFF2528 0.54 +0.6 196,654 - GFF2528 0.54 +1.0 196,698 + GFF2528 0.58 +1.1 196,698 + GFF2528 0.58 +0.3 196,803 + GFF2528 0.68 +1.2 196,804 - GFF2528 0.68 +0.6 196,809 + GFF2528 0.69 +0.4 196,923 + GFF2528 0.80 +0.4 196,923 + GFF2528 0.80 +0.4 196,923 + GFF2528 0.80 +1.0 196,923 + GFF2528 0.80 +0.0 196,924 - GFF2528 0.80 -1.0 196,924 - GFF2528 0.80 -0.9 196,924 - GFF2528 0.80 +0.2 197,116 - +0.4 197,222 + -0.9 197,222 + +0.4 197,222 + -0.5 197,223 - -1.6 197,226 + +0.0 197,303 - +0.6 197,303 - -0.2 197,303 - +0.5 197,584 - GFF2529 0.29 -0.0 197,624 + GFF2529 0.33 +0.7 197,625 - GFF2529 0.33 -0.7 197,882 + GFF2529 0.64 +0.3 198,176 + -0.4 198,176 + -0.9 198,246 - +0.4 198,294 + -0.4 198,295 - -0.6 198,313 + -0.5 198,338 + -0.6 198,373 - -0.6 198,417 + -0.2 198,424 + +1.0 198,889 - GFF2530 0.33 +0.1 198,889 - GFF2530 0.33 -0.4 198,889 - GFF2530 0.33 +0.3 198,889 - GFF2530 0.33 -0.3 198,889 - GFF2530 0.33 -1.3 198,971 + GFF2530 0.41 +0.7 198,971 + GFF2530 0.41 -0.0 198,971 + GFF2530 0.41 -0.2 198,972 - GFF2530 0.41 +0.5 198,972 - GFF2530 0.41 +0.1 198,972 - GFF2530 0.41 -0.6 198,972 - GFF2530 0.41 +0.1 199,112 + GFF2530 0.55 +0.3 199,112 + GFF2530 0.55 -0.0 199,112 + GFF2530 0.55 -0.2 199,112 + GFF2530 0.55 +1.3 199,112 + GFF2530 0.55 -0.2 199,113 - GFF2530 0.55 +0.8 199,113 - GFF2530 0.55 +0.4 199,113 - GFF2530 0.55 +1.2 199,113 - GFF2530 0.55 +1.0 199,113 - GFF2530 0.55 +0.6 199,113 - GFF2530 0.55 -0.4
Or see this region's nucleotide sequence