Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2521 and GFF2522 are separated by 45 nucleotides GFF2522 and GFF2523 are separated by 139 nucleotides
GFF2521 - L-carnitine dehydrogenase, at 184,776 to 185,723
GFF2521
GFF2522 - 3-keto-5-aminohexanoate cleavage enzyme, at 185,769 to 186,719
GFF2522
GFF2523 - Glutamate synthase [NADPH] small chain, at 186,859 to 188,280
GFF2523
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.902 kb on + strand, within GFF2521 at 184.902 kb on + strand, within GFF2521 at 184.902 kb on + strand, within GFF2521 at 184.902 kb on + strand, within GFF2521 at 184.903 kb on - strand, within GFF2521 at 184.903 kb on - strand, within GFF2521 at 184.903 kb on - strand, within GFF2521 at 184.903 kb on - strand, within GFF2521 at 184.998 kb on + strand, within GFF2521 at 184.998 kb on + strand, within GFF2521 at 185.073 kb on + strand, within GFF2521 at 185.074 kb on - strand, within GFF2521 at 185.074 kb on - strand, within GFF2521 at 185.074 kb on - strand, within GFF2521 at 185.209 kb on - strand, within GFF2521 at 185.209 kb on - strand, within GFF2521 at 185.398 kb on - strand, within GFF2521 at 185.398 kb on - strand, within GFF2521 at 185.512 kb on - strand, within GFF2521 at 185.535 kb on + strand, within GFF2521 at 185.535 kb on + strand, within GFF2521 at 185.535 kb on + strand, within GFF2521 at 185.536 kb on - strand, within GFF2521 at 185.536 kb on - strand, within GFF2521 at 185.536 kb on - strand, within GFF2521 at 185.536 kb on - strand, within GFF2521 at 185.536 kb on - strand, within GFF2521 at 185.710 kb on - strand at 185.753 kb on + strand at 185.754 kb on - strand at 185.754 kb on - strand at 185.793 kb on + strand at 185.859 kb on + strand at 185.860 kb on - strand at 185.860 kb on - strand at 185.860 kb on - strand at 186.057 kb on + strand, within GFF2522 at 186.057 kb on + strand, within GFF2522 at 186.057 kb on + strand, within GFF2522 at 186.057 kb on + strand, within GFF2522 at 186.057 kb on + strand, within GFF2522 at 186.057 kb on + strand, within GFF2522 at 186.058 kb on - strand, within GFF2522 at 186.058 kb on - strand, within GFF2522 at 186.058 kb on - strand, within GFF2522 at 186.058 kb on - strand, within GFF2522 at 186.058 kb on - strand, within GFF2522 at 186.058 kb on - strand, within GFF2522 at 186.058 kb on - strand, within GFF2522 at 186.058 kb on - strand, within GFF2522 at 186.162 kb on - strand, within GFF2522 at 186.162 kb on - strand, within GFF2522 at 186.165 kb on + strand, within GFF2522 at 186.165 kb on + strand, within GFF2522 at 186.165 kb on + strand, within GFF2522 at 186.244 kb on - strand, within GFF2522 at 186.254 kb on + strand, within GFF2522 at 186.255 kb on - strand, within GFF2522 at 186.275 kb on + strand, within GFF2522 at 186.304 kb on - strand, within GFF2522 at 186.304 kb on - strand, within GFF2522 at 186.308 kb on + strand, within GFF2522 at 186.321 kb on + strand, within GFF2522 at 186.321 kb on + strand, within GFF2522 at 186.322 kb on - strand, within GFF2522 at 186.469 kb on - strand, within GFF2522
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 184,902 + GFF2521 0.13 +0.6 184,902 + GFF2521 0.13 -0.1 184,902 + GFF2521 0.13 -0.5 184,902 + GFF2521 0.13 -0.3 184,903 - GFF2521 0.13 +0.7 184,903 - GFF2521 0.13 -0.1 184,903 - GFF2521 0.13 -0.7 184,903 - GFF2521 0.13 +0.3 184,998 + GFF2521 0.23 +0.6 184,998 + GFF2521 0.23 +0.5 185,073 + GFF2521 0.31 -0.9 185,074 - GFF2521 0.31 +0.0 185,074 - GFF2521 0.31 -0.3 185,074 - GFF2521 0.31 -0.4 185,209 - GFF2521 0.46 -0.1 185,209 - GFF2521 0.46 -0.1 185,398 - GFF2521 0.66 -0.4 185,398 - GFF2521 0.66 -1.2 185,512 - GFF2521 0.78 +1.0 185,535 + GFF2521 0.80 +0.5 185,535 + GFF2521 0.80 -0.0 185,535 + GFF2521 0.80 -0.2 185,536 - GFF2521 0.80 -0.2 185,536 - GFF2521 0.80 +0.4 185,536 - GFF2521 0.80 -0.4 185,536 - GFF2521 0.80 -0.8 185,536 - GFF2521 0.80 -0.0 185,710 - -1.2 185,753 + +0.4 185,754 - -1.5 185,754 - -0.6 185,793 + -0.7 185,859 + +0.6 185,860 - -0.1 185,860 - -0.7 185,860 - -0.5 186,057 + GFF2522 0.30 -0.2 186,057 + GFF2522 0.30 +0.8 186,057 + GFF2522 0.30 -0.4 186,057 + GFF2522 0.30 +0.0 186,057 + GFF2522 0.30 +0.5 186,057 + GFF2522 0.30 -0.2 186,058 - GFF2522 0.30 +0.8 186,058 - GFF2522 0.30 +0.1 186,058 - GFF2522 0.30 -1.6 186,058 - GFF2522 0.30 -0.1 186,058 - GFF2522 0.30 -0.9 186,058 - GFF2522 0.30 +1.2 186,058 - GFF2522 0.30 -0.4 186,058 - GFF2522 0.30 +0.5 186,162 - GFF2522 0.41 +0.7 186,162 - GFF2522 0.41 -1.5 186,165 + GFF2522 0.42 -0.2 186,165 + GFF2522 0.42 -0.7 186,165 + GFF2522 0.42 +1.0 186,244 - GFF2522 0.50 -0.9 186,254 + GFF2522 0.51 -0.2 186,255 - GFF2522 0.51 +0.1 186,275 + GFF2522 0.53 -0.4 186,304 - GFF2522 0.56 -0.4 186,304 - GFF2522 0.56 -0.4 186,308 + GFF2522 0.57 -0.3 186,321 + GFF2522 0.58 +0.2 186,321 + GFF2522 0.58 -0.6 186,322 - GFF2522 0.58 +0.2 186,469 - GFF2522 0.74 +0.5
Or see this region's nucleotide sequence