Strain Fitness in Xanthobacter sp. DMC5 around GFF2443

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2442 and GFF2443 are separated by 220 nucleotidesGFF2443 and GFF2444 are separated by 257 nucleotides GFF2442 - Fructose-bisphosphate aldolase, at 98,214 to 99,278 GFF2442 GFF2443 - Transketolase 2, at 99,499 to 101,562 GFF2443 GFF2444 - Phosphoribulokinase, chromosomal, at 101,820 to 102,695 GFF2444 Position (kb) 99 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 98.512 kb on + strand, within GFF2442at 98.513 kb on - strand, within GFF2442at 98.513 kb on - strand, within GFF2442at 98.536 kb on + strand, within GFF2442at 98.536 kb on + strand, within GFF2442at 98.536 kb on + strand, within GFF2442at 98.537 kb on - strand, within GFF2442at 98.537 kb on - strand, within GFF2442at 98.537 kb on - strand, within GFF2442at 98.630 kb on + strand, within GFF2442at 98.630 kb on + strand, within GFF2442at 98.631 kb on - strand, within GFF2442at 98.677 kb on + strand, within GFF2442at 98.920 kb on + strand, within GFF2442at 98.920 kb on + strand, within GFF2442at 98.920 kb on + strand, within GFF2442at 98.920 kb on + strand, within GFF2442at 98.921 kb on - strand, within GFF2442at 98.921 kb on - strand, within GFF2442at 98.921 kb on - strand, within GFF2442at 98.921 kb on - strand, within GFF2442at 98.926 kb on + strand, within GFF2442at 98.926 kb on + strand, within GFF2442at 98.926 kb on + strand, within GFF2442at 99.112 kb on + strand, within GFF2442at 99.113 kb on - strand, within GFF2442at 99.113 kb on - strand, within GFF2442at 99.278 kb on + strandat 99.278 kb on + strandat 99.278 kb on + strandat 99.278 kb on + strandat 99.279 kb on - strandat 99.279 kb on - strandat 99.279 kb on - strandat 99.279 kb on - strandat 99.356 kb on + strandat 99.356 kb on + strandat 99.357 kb on - strandat 99.506 kb on - strandat 99.543 kb on + strandat 99.543 kb on + strandat 99.878 kb on + strand, within GFF2443at 99.878 kb on + strand, within GFF2443at 99.878 kb on + strand, within GFF2443at 99.878 kb on + strand, within GFF2443at 99.879 kb on - strand, within GFF2443at 100.130 kb on + strand, within GFF2443at 100.130 kb on + strand, within GFF2443at 100.130 kb on + strand, within GFF2443at 100.130 kb on + strand, within GFF2443at 100.130 kb on + strand, within GFF2443at 100.130 kb on + strand, within GFF2443at 100.130 kb on + strand, within GFF2443at 100.130 kb on + strand, within GFF2443at 100.131 kb on - strand, within GFF2443at 100.131 kb on - strand, within GFF2443at 100.131 kb on - strand, within GFF2443at 100.131 kb on - strand, within GFF2443at 100.131 kb on - strand, within GFF2443at 100.181 kb on + strand, within GFF2443at 100.182 kb on - strand, within GFF2443at 100.478 kb on + strand, within GFF2443at 100.478 kb on + strand, within GFF2443at 100.479 kb on - strand, within GFF2443at 100.479 kb on - strand, within GFF2443at 100.479 kb on - strand, within GFF2443at 100.559 kb on + strand, within GFF2443at 100.559 kb on + strand, within GFF2443at 100.559 kb on + strand, within GFF2443at 100.559 kb on + strand, within GFF2443at 100.560 kb on - strand, within GFF2443at 100.560 kb on - strand, within GFF2443at 100.628 kb on + strand, within GFF2443at 100.628 kb on + strand, within GFF2443at 100.628 kb on + strand, within GFF2443at 100.628 kb on + strand, within GFF2443at 100.628 kb on + strand, within GFF2443at 100.629 kb on - strand, within GFF2443at 100.629 kb on - strand, within GFF2443at 100.877 kb on + strand, within GFF2443at 100.878 kb on - strand, within GFF2443at 101.285 kb on + strand, within GFF2443at 101.286 kb on - strand, within GFF2443at 101.286 kb on - strand, within GFF2443at 101.286 kb on - strand, within GFF2443at 101.645 kb on + strandat 101.809 kb on - strandat 101.809 kb on - strandat 101.892 kb on + strandat 101.963 kb on - strand, within GFF2444at 102.115 kb on + strand, within GFF2444at 102.115 kb on + strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.124 kb on + strand, within GFF2444at 102.125 kb on - strand, within GFF2444at 102.125 kb on - strand, within GFF2444at 102.307 kb on + strand, within GFF2444at 102.307 kb on + strand, within GFF2444at 102.308 kb on - strand, within GFF2444at 102.308 kb on - strand, within GFF2444at 102.373 kb on + strand, within GFF2444at 102.374 kb on - strand, within GFF2444at 102.404 kb on - strand, within GFF2444at 102.404 kb on - strand, within GFF2444at 102.437 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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98,512 + GFF2442 0.28 +0.6
98,513 - GFF2442 0.28 +0.5
98,513 - GFF2442 0.28 -0.4
98,536 + GFF2442 0.30 -0.6
98,536 + GFF2442 0.30 -2.8
98,536 + GFF2442 0.30 +1.2
98,537 - GFF2442 0.30 -0.5
98,537 - GFF2442 0.30 -0.0
98,537 - GFF2442 0.30 +0.1
98,630 + GFF2442 0.39 +0.7
98,630 + GFF2442 0.39 +0.4
98,631 - GFF2442 0.39 +0.4
98,677 + GFF2442 0.43 -0.0
98,920 + GFF2442 0.66 -0.6
98,920 + GFF2442 0.66 -0.7
98,920 + GFF2442 0.66 +0.4
98,920 + GFF2442 0.66 +0.4
98,921 - GFF2442 0.66 -0.2
98,921 - GFF2442 0.66 +0.2
98,921 - GFF2442 0.66 -0.0
98,921 - GFF2442 0.66 -0.2
98,926 + GFF2442 0.67 +0.2
98,926 + GFF2442 0.67 +0.8
98,926 + GFF2442 0.67 -1.4
99,112 + GFF2442 0.84 -0.2
99,113 - GFF2442 0.84 -0.1
99,113 - GFF2442 0.84 +0.3
99,278 + +0.5
99,278 + +0.3
99,278 + +0.2
99,278 + -0.6
99,279 - +0.1
99,279 - +0.8
99,279 - +1.3
99,279 - +0.4
99,356 + +0.3
99,356 + -0.4
99,357 - -0.2
99,506 - +0.0
99,543 + +0.3
99,543 + -0.6
99,878 + GFF2443 0.18 -1.2
99,878 + GFF2443 0.18 -0.1
99,878 + GFF2443 0.18 +1.4
99,878 + GFF2443 0.18 +0.1
99,879 - GFF2443 0.18 +0.1
100,130 + GFF2443 0.31 +1.0
100,130 + GFF2443 0.31 -1.0
100,130 + GFF2443 0.31 -0.0
100,130 + GFF2443 0.31 +0.0
100,130 + GFF2443 0.31 +1.3
100,130 + GFF2443 0.31 -1.4
100,130 + GFF2443 0.31 +0.3
100,130 + GFF2443 0.31 +0.2
100,131 - GFF2443 0.31 -0.8
100,131 - GFF2443 0.31 +0.2
100,131 - GFF2443 0.31 +0.1
100,131 - GFF2443 0.31 +0.5
100,131 - GFF2443 0.31 +0.4
100,181 + GFF2443 0.33 -0.7
100,182 - GFF2443 0.33 -0.6
100,478 + GFF2443 0.47 -0.7
100,478 + GFF2443 0.47 +0.2
100,479 - GFF2443 0.47 -0.8
100,479 - GFF2443 0.47 -0.9
100,479 - GFF2443 0.47 +1.0
100,559 + GFF2443 0.51 +0.1
100,559 + GFF2443 0.51 -0.3
100,559 + GFF2443 0.51 -1.1
100,559 + GFF2443 0.51 -1.8
100,560 - GFF2443 0.51 +0.0
100,560 - GFF2443 0.51 -0.6
100,628 + GFF2443 0.55 +0.5
100,628 + GFF2443 0.55 +0.1
100,628 + GFF2443 0.55 +0.0
100,628 + GFF2443 0.55 -1.0
100,628 + GFF2443 0.55 +0.5
100,629 - GFF2443 0.55 -0.1
100,629 - GFF2443 0.55 +1.0
100,877 + GFF2443 0.67 +3.0
100,878 - GFF2443 0.67 -0.8
101,285 + GFF2443 0.87 +1.0
101,286 - GFF2443 0.87 +0.6
101,286 - GFF2443 0.87 +0.4
101,286 - GFF2443 0.87 +0.2
101,645 + -0.7
101,809 - -0.3
101,809 - -1.5
101,892 + +0.4
101,963 - GFF2444 0.16 -0.6
102,115 + GFF2444 0.34 +0.8
102,115 + GFF2444 0.34 -0.1
102,116 - GFF2444 0.34 +1.0
102,116 - GFF2444 0.34 +0.4
102,116 - GFF2444 0.34 -0.8
102,124 + GFF2444 0.35 +0.3
102,125 - GFF2444 0.35 -1.9
102,125 - GFF2444 0.35 +0.1
102,307 + GFF2444 0.56 -0.4
102,307 + GFF2444 0.56 +0.2
102,308 - GFF2444 0.56 +0.4
102,308 - GFF2444 0.56 +2.0
102,373 + GFF2444 0.63 +0.6
102,374 - GFF2444 0.63 +0.1
102,404 - GFF2444 0.67 +0.1
102,404 - GFF2444 0.67 +1.2
102,437 - GFF2444 0.70 -0.3
102,548 - GFF2444 0.83 -0.2
102,548 - GFF2444 0.83 -0.6
102,548 - GFF2444 0.83 -1.2

Or see this region's nucleotide sequence