Strain Fitness in Xanthobacter sp. DMC5 around GFF24

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF23 and GFF24 are separated by 205 nucleotidesGFF24 and GFF25 are separated by 29 nucleotidesGFF25 and GFF26 overlap by 4 nucleotides GFF23 - Fosfomycin resistance protein AbaF, at 27,789 to 29,195 GFF23 GFF24 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 29,401 to 30,564 GFF24 GFF25 - Flavin reductase, at 30,594 to 31,109 GFF25 GFF26 - Acetyl-CoA:oxalate CoA-transferase, at 31,106 to 32,308 GFF26 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1at 28.428 kb on + strand, within GFF23at 28.428 kb on + strand, within GFF23at 28.429 kb on - strand, within GFF23at 28.429 kb on - strand, within GFF23at 28.429 kb on - strand, within GFF23at 28.608 kb on + strand, within GFF23at 28.705 kb on - strand, within GFF23at 28.737 kb on + strand, within GFF23at 28.737 kb on + strand, within GFF23at 28.737 kb on + strand, within GFF23at 28.737 kb on + strand, within GFF23at 28.780 kb on - strand, within GFF23at 28.780 kb on - strand, within GFF23at 28.860 kb on + strand, within GFF23at 28.860 kb on + strand, within GFF23at 28.861 kb on - strand, within GFF23at 28.932 kb on + strand, within GFF23at 28.998 kb on + strand, within GFF23at 29.026 kb on - strand, within GFF23at 29.026 kb on - strand, within GFF23at 29.094 kb on + strandat 29.094 kb on + strandat 29.094 kb on + strandat 29.633 kb on - strand, within GFF24at 29.736 kb on + strand, within GFF24at 29.744 kb on - strand, within GFF24at 29.744 kb on - strand, within GFF24at 29.833 kb on + strand, within GFF24at 29.833 kb on + strand, within GFF24at 29.890 kb on + strand, within GFF24at 29.890 kb on + strand, within GFF24at 29.890 kb on + strand, within GFF24at 29.891 kb on - strand, within GFF24at 30.062 kb on - strand, within GFF24at 30.062 kb on - strand, within GFF24at 30.147 kb on + strand, within GFF24at 30.215 kb on + strand, within GFF24at 30.254 kb on - strand, within GFF24at 30.254 kb on - strand, within GFF24at 30.301 kb on + strand, within GFF24at 30.574 kb on + strandat 30.762 kb on + strand, within GFF25at 30.763 kb on - strand, within GFF25at 30.763 kb on - strand, within GFF25at 31.059 kb on + strandat 31.060 kb on - strandat 31.060 kb on - strandat 31.075 kb on - strandat 31.075 kb on - strandat 31.075 kb on - strandat 31.502 kb on + strand, within GFF26at 31.502 kb on + strand, within GFF26at 31.503 kb on - strand, within GFF26at 31.539 kb on - strand, within GFF26at 31.539 kb on - strand, within GFF26

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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28,428 + GFF23 0.45 +0.8
28,428 + GFF23 0.45 +0.1
28,429 - GFF23 0.45 +0.7
28,429 - GFF23 0.45 -0.4
28,429 - GFF23 0.45 -0.6
28,608 + GFF23 0.58 -0.4
28,705 - GFF23 0.65 -1.1
28,737 + GFF23 0.67 +0.3
28,737 + GFF23 0.67 -0.4
28,737 + GFF23 0.67 -0.0
28,737 + GFF23 0.67 -0.2
28,780 - GFF23 0.70 +1.3
28,780 - GFF23 0.70 +0.2
28,860 + GFF23 0.76 -0.2
28,860 + GFF23 0.76 +1.0
28,861 - GFF23 0.76 +0.2
28,932 + GFF23 0.81 +0.3
28,998 + GFF23 0.86 -1.4
29,026 - GFF23 0.88 -0.8
29,026 - GFF23 0.88 -0.3
29,094 + +0.1
29,094 + +0.7
29,094 + -0.2
29,633 - GFF24 0.20 -0.6
29,736 + GFF24 0.29 +0.2
29,744 - GFF24 0.29 -0.6
29,744 - GFF24 0.29 +0.4
29,833 + GFF24 0.37 -0.4
29,833 + GFF24 0.37 +0.8
29,890 + GFF24 0.42 -0.4
29,890 + GFF24 0.42 +0.5
29,890 + GFF24 0.42 -0.4
29,891 - GFF24 0.42 -0.6
30,062 - GFF24 0.57 -1.4
30,062 - GFF24 0.57 +0.8
30,147 + GFF24 0.64 -1.8
30,215 + GFF24 0.70 -0.0
30,254 - GFF24 0.73 -0.7
30,254 - GFF24 0.73 -0.8
30,301 + GFF24 0.77 +0.2
30,574 + +0.0
30,762 + GFF25 0.33 -0.6
30,763 - GFF25 0.33 -1.4
30,763 - GFF25 0.33 +0.5
31,059 + +0.9
31,060 - -0.2
31,060 - -0.6
31,075 - -0.6
31,075 - +0.2
31,075 - -0.4
31,502 + GFF26 0.33 -0.4
31,502 + GFF26 0.33 -1.9
31,503 - GFF26 0.33 +0.1
31,539 - GFF26 0.36 +0.1
31,539 - GFF26 0.36 -0.7

Or see this region's nucleotide sequence