Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2361 and GFF2362 are separated by 142 nucleotides GFF2362 and GFF2363 are separated by 10 nucleotides GFF2363 and GFF2364 are separated by 122 nucleotides GFF2364 and GFF2365 are separated by 67 nucleotides
GFF2361 - hypothetical protein, at 13,939 to 15,186
GFF2361
GFF2362 - hypothetical protein, at 15,329 to 15,793
GFF2362
GFF2363 - HTH-type transcriptional regulator HdfR, at 15,804 to 16,718
GFF2363
GFF2364 - hypothetical protein, at 16,841 to 17,269
GFF2364
GFF2365 - Octaprenyl diphosphate synthase, at 17,337 to 18,344
GFF2365
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 14.836 kb on + strand, within GFF2361 at 14.837 kb on - strand, within GFF2361 at 14.900 kb on - strand, within GFF2361 at 14.986 kb on + strand, within GFF2361 at 14.987 kb on - strand, within GFF2361 at 14.987 kb on - strand, within GFF2361 at 14.987 kb on - strand, within GFF2361 at 15.001 kb on + strand, within GFF2361 at 15.001 kb on + strand, within GFF2361 at 15.002 kb on - strand, within GFF2361 at 15.049 kb on + strand, within GFF2361 at 15.067 kb on + strand at 15.068 kb on - strand at 15.068 kb on - strand at 15.068 kb on - strand at 15.085 kb on + strand at 15.085 kb on + strand at 15.085 kb on + strand at 15.085 kb on + strand at 15.085 kb on + strand at 15.086 kb on - strand at 15.182 kb on + strand at 15.249 kb on + strand at 15.500 kb on + strand, within GFF2362 at 15.973 kb on - strand, within GFF2363 at 16.067 kb on + strand, within GFF2363 at 16.222 kb on + strand, within GFF2363 at 16.222 kb on + strand, within GFF2363 at 16.222 kb on + strand, within GFF2363 at 16.222 kb on + strand, within GFF2363 at 16.223 kb on - strand, within GFF2363 at 16.223 kb on - strand, within GFF2363 at 16.223 kb on - strand, within GFF2363 at 16.223 kb on - strand, within GFF2363 at 16.223 kb on - strand, within GFF2363 at 16.223 kb on - strand, within GFF2363 at 16.223 kb on - strand, within GFF2363 at 16.781 kb on - strand at 17.054 kb on + strand, within GFF2364 at 17.108 kb on + strand, within GFF2364 at 17.108 kb on + strand, within GFF2364 at 17.324 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 14,836 + GFF2361 0.72 -1.5 14,837 - GFF2361 0.72 -0.2 14,900 - GFF2361 0.77 -0.5 14,986 + GFF2361 0.84 -1.0 14,987 - GFF2361 0.84 +0.4 14,987 - GFF2361 0.84 +0.6 14,987 - GFF2361 0.84 +0.6 15,001 + GFF2361 0.85 +0.7 15,001 + GFF2361 0.85 -0.6 15,002 - GFF2361 0.85 +0.8 15,049 + GFF2361 0.89 -0.8 15,067 + -1.4 15,068 - +0.8 15,068 - -1.2 15,068 - -0.8 15,085 + -0.0 15,085 + -0.2 15,085 + -0.2 15,085 + +1.0 15,085 + +0.5 15,086 - +0.1 15,182 + -0.0 15,249 + +0.5 15,500 + GFF2362 0.37 +2.9 15,973 - GFF2363 0.18 -0.8 16,067 + GFF2363 0.29 -0.6 16,222 + GFF2363 0.46 -1.2 16,222 + GFF2363 0.46 -0.5 16,222 + GFF2363 0.46 +0.6 16,222 + GFF2363 0.46 +0.3 16,223 - GFF2363 0.46 -0.4 16,223 - GFF2363 0.46 -2.3 16,223 - GFF2363 0.46 -0.8 16,223 - GFF2363 0.46 +1.0 16,223 - GFF2363 0.46 -0.2 16,223 - GFF2363 0.46 +0.1 16,223 - GFF2363 0.46 -0.8 16,781 - -0.8 17,054 + GFF2364 0.50 -0.2 17,108 + GFF2364 0.62 -1.1 17,108 + GFF2364 0.62 -0.2 17,324 + -0.1
Or see this region's nucleotide sequence