Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2275 and GFF2276 are separated by 128 nucleotides GFF2276 and GFF2277 are separated by 6 nucleotides GFF2277 and GFF2278 are separated by 23 nucleotides
GFF2275 - hypothetical protein, at 983,575 to 984,009
GFF2275
GFF2276 - NAD(P)H azoreductase, at 984,138 to 984,974
GFF2276
GFF2277 - hypothetical protein, at 984,981 to 985,427
GFF2277
GFF2278 - (2S)-methylsuccinyl-CoA dehydrogenase, at 985,451 to 987,142
GFF2278
Position (kb) 984
985
986 Strain fitness (log2 ratio) -2
-1
0
1 at 984.057 kb on - strand at 984.717 kb on + strand, within GFF2276 at 984.718 kb on - strand, within GFF2276 at 984.769 kb on - strand, within GFF2276 at 984.943 kb on - strand at 984.943 kb on - strand at 985.033 kb on + strand, within GFF2277 at 985.034 kb on - strand, within GFF2277 at 985.052 kb on + strand, within GFF2277 at 985.052 kb on + strand, within GFF2277 at 985.053 kb on - strand, within GFF2277 at 985.073 kb on - strand, within GFF2277 at 985.181 kb on - strand, within GFF2277 at 985.342 kb on + strand, within GFF2277 at 985.343 kb on - strand, within GFF2277 at 985.343 kb on - strand, within GFF2277 at 985.343 kb on - strand, within GFF2277 at 985.343 kb on - strand, within GFF2277 at 985.354 kb on + strand, within GFF2277 at 985.354 kb on + strand, within GFF2277 at 985.355 kb on - strand, within GFF2277 at 985.701 kb on + strand, within GFF2278 at 985.701 kb on + strand, within GFF2278 at 985.702 kb on - strand, within GFF2278 at 985.702 kb on - strand, within GFF2278 at 985.809 kb on + strand, within GFF2278 at 985.975 kb on - strand, within GFF2278 at 986.187 kb on + strand, within GFF2278 at 986.188 kb on - strand, within GFF2278 at 986.188 kb on - strand, within GFF2278 at 986.387 kb on - strand, within GFF2278 at 986.387 kb on - strand, within GFF2278 at 986.389 kb on - strand, within GFF2278
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 984,057 - +1.7 984,717 + GFF2276 0.69 -0.3 984,718 - GFF2276 0.69 -0.6 984,769 - GFF2276 0.75 +0.4 984,943 - +0.0 984,943 - +0.5 985,033 + GFF2277 0.12 +0.4 985,034 - GFF2277 0.12 +0.3 985,052 + GFF2277 0.16 +1.1 985,052 + GFF2277 0.16 +1.2 985,053 - GFF2277 0.16 -0.4 985,073 - GFF2277 0.21 -0.4 985,181 - GFF2277 0.45 -0.3 985,342 + GFF2277 0.81 -0.1 985,343 - GFF2277 0.81 +0.2 985,343 - GFF2277 0.81 +0.0 985,343 - GFF2277 0.81 +1.1 985,343 - GFF2277 0.81 +1.0 985,354 + GFF2277 0.83 +0.4 985,354 + GFF2277 0.83 +1.0 985,355 - GFF2277 0.84 +0.2 985,701 + GFF2278 0.15 -0.2 985,701 + GFF2278 0.15 +1.1 985,702 - GFF2278 0.15 -0.6 985,702 - GFF2278 0.15 +1.7 985,809 + GFF2278 0.21 -0.8 985,975 - GFF2278 0.31 -2.2 986,187 + GFF2278 0.43 -1.1 986,188 - GFF2278 0.44 -1.7 986,188 - GFF2278 0.44 -1.0 986,387 - GFF2278 0.55 +0.4 986,387 - GFF2278 0.55 -0.0 986,389 - GFF2278 0.55 -0.0
Or see this region's nucleotide sequence