Strain Fitness in Xanthobacter sp. DMC5 around GFF2213

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2211 and GFF2212 are separated by 10 nucleotidesGFF2212 and GFF2213 are separated by 665 nucleotidesGFF2213 and GFF2214 are separated by 173 nucleotidesGFF2214 and GFF2215 are separated by 25 nucleotides GFF2211 - hypothetical protein, at 915,329 to 915,697 GFF2211 GFF2212 - hypothetical protein, at 915,708 to 915,950 GFF2212 GFF2213 - Pyruvate dehydrogenase E1 component, at 916,616 to 919,054 GFF2213 GFF2214 - Leucine-responsive regulatory protein, at 919,228 to 919,689 GFF2214 GFF2215 - hypothetical protein, at 919,715 to 920,524 GFF2215 Position (kb) 916 917 918 919 920Strain fitness (log2 ratio) -2 -1 0 1at 915.683 kb on - strandat 915.694 kb on - strandat 915.698 kb on - strandat 915.745 kb on + strand, within GFF2212at 916.032 kb on - strandat 916.032 kb on - strandat 916.042 kb on + strandat 916.114 kb on - strandat 916.122 kb on + strandat 916.303 kb on + strandat 916.655 kb on + strandat 916.656 kb on - strandat 916.699 kb on - strandat 916.708 kb on - strandat 917.040 kb on - strand, within GFF2213at 917.076 kb on + strand, within GFF2213at 917.076 kb on + strand, within GFF2213at 917.076 kb on + strand, within GFF2213at 917.233 kb on - strand, within GFF2213at 917.418 kb on + strand, within GFF2213at 917.418 kb on + strand, within GFF2213at 917.419 kb on - strand, within GFF2213at 917.419 kb on - strand, within GFF2213at 917.419 kb on - strand, within GFF2213at 917.419 kb on - strand, within GFF2213at 917.419 kb on - strand, within GFF2213at 917.457 kb on + strand, within GFF2213at 917.457 kb on + strand, within GFF2213at 917.457 kb on + strand, within GFF2213at 917.841 kb on + strand, within GFF2213at 917.842 kb on - strand, within GFF2213at 917.842 kb on - strand, within GFF2213at 918.051 kb on + strand, within GFF2213at 918.051 kb on + strand, within GFF2213at 918.051 kb on + strand, within GFF2213at 918.052 kb on - strand, within GFF2213at 918.345 kb on + strand, within GFF2213at 918.402 kb on + strand, within GFF2213at 918.403 kb on - strand, within GFF2213at 918.403 kb on - strand, within GFF2213at 918.445 kb on - strand, within GFF2213at 918.594 kb on + strand, within GFF2213at 918.594 kb on + strand, within GFF2213at 918.594 kb on + strand, within GFF2213at 918.594 kb on + strand, within GFF2213at 918.595 kb on - strand, within GFF2213at 918.595 kb on - strand, within GFF2213at 918.693 kb on + strand, within GFF2213at 918.694 kb on - strand, within GFF2213at 919.132 kb on + strandat 919.171 kb on - strandat 919.301 kb on + strand, within GFF2214at 919.490 kb on + strand, within GFF2214at 919.490 kb on + strand, within GFF2214at 919.491 kb on - strand, within GFF2214at 919.519 kb on + strand, within GFF2214at 919.520 kb on - strand, within GFF2214at 919.520 kb on - strand, within GFF2214at 919.544 kb on - strand, within GFF2214at 919.579 kb on + strand, within GFF2214at 919.580 kb on - strand, within GFF2214at 919.580 kb on - strand, within GFF2214at 919.664 kb on - strandat 919.722 kb on + strandat 919.722 kb on + strandat 919.853 kb on + strand, within GFF2215at 919.853 kb on + strand, within GFF2215at 919.937 kb on + strand, within GFF2215at 919.937 kb on + strand, within GFF2215at 919.937 kb on + strand, within GFF2215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
915,683 - +0.3
915,694 - +0.8
915,698 - -0.0
915,745 + GFF2212 0.15 +0.5
916,032 - +0.5
916,032 - -0.3
916,042 + -0.0
916,114 - +0.6
916,122 + +0.3
916,303 + +0.7
916,655 + +0.3
916,656 - +0.3
916,699 - -0.5
916,708 - +0.3
917,040 - GFF2213 0.17 +0.7
917,076 + GFF2213 0.19 -0.5
917,076 + GFF2213 0.19 +0.8
917,076 + GFF2213 0.19 -0.7
917,233 - GFF2213 0.25 -0.6
917,418 + GFF2213 0.33 -1.3
917,418 + GFF2213 0.33 +0.4
917,419 - GFF2213 0.33 -0.0
917,419 - GFF2213 0.33 -1.3
917,419 - GFF2213 0.33 -0.5
917,419 - GFF2213 0.33 +0.4
917,419 - GFF2213 0.33 -0.1
917,457 + GFF2213 0.34 -0.6
917,457 + GFF2213 0.34 -0.0
917,457 + GFF2213 0.34 +1.5
917,841 + GFF2213 0.50 +0.1
917,842 - GFF2213 0.50 -0.1
917,842 - GFF2213 0.50 -1.0
918,051 + GFF2213 0.59 -1.3
918,051 + GFF2213 0.59 +0.2
918,051 + GFF2213 0.59 +0.5
918,052 - GFF2213 0.59 +0.7
918,345 + GFF2213 0.71 -0.0
918,402 + GFF2213 0.73 +1.3
918,403 - GFF2213 0.73 -0.2
918,403 - GFF2213 0.73 +0.3
918,445 - GFF2213 0.75 -2.2
918,594 + GFF2213 0.81 +0.9
918,594 + GFF2213 0.81 +0.0
918,594 + GFF2213 0.81 -1.3
918,594 + GFF2213 0.81 +0.2
918,595 - GFF2213 0.81 +0.7
918,595 - GFF2213 0.81 -0.9
918,693 + GFF2213 0.85 +0.1
918,694 - GFF2213 0.85 -1.4
919,132 + -0.3
919,171 - +0.6
919,301 + GFF2214 0.16 +1.0
919,490 + GFF2214 0.57 +0.6
919,490 + GFF2214 0.57 +0.3
919,491 - GFF2214 0.57 +1.2
919,519 + GFF2214 0.63 +0.7
919,520 - GFF2214 0.63 +0.1
919,520 - GFF2214 0.63 +1.3
919,544 - GFF2214 0.68 -0.2
919,579 + GFF2214 0.76 +0.0
919,580 - GFF2214 0.76 +0.7
919,580 - GFF2214 0.76 +1.0
919,664 - +0.4
919,722 + -0.8
919,722 + -0.4
919,853 + GFF2215 0.17 +0.6
919,853 + GFF2215 0.17 -1.1
919,937 + GFF2215 0.27 +0.7
919,937 + GFF2215 0.27 +0.4
919,937 + GFF2215 0.27 -1.0

Or see this region's nucleotide sequence