Strain Fitness in Xanthobacter sp. DMC5 around GFF2199

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2198 and GFF2199 are separated by 19 nucleotidesGFF2199 and GFF2200 are separated by 9 nucleotides GFF2198 - hypothetical protein, at 896,443 to 897,930 GFF2198 GFF2199 - hypothetical protein, at 897,950 to 899,080 GFF2199 GFF2200 - hypothetical protein, at 899,090 to 902,104 GFF2200 Position (kb) 897 898 899 900Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 896.953 kb on + strand, within GFF2198at 896.953 kb on + strand, within GFF2198at 896.953 kb on + strand, within GFF2198at 897.019 kb on + strand, within GFF2198at 897.019 kb on + strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.201 kb on + strand, within GFF2198at 897.201 kb on + strand, within GFF2198at 897.202 kb on - strand, within GFF2198at 897.331 kb on + strand, within GFF2198at 897.331 kb on + strand, within GFF2198at 897.331 kb on + strand, within GFF2198at 897.332 kb on - strand, within GFF2198at 897.332 kb on - strand, within GFF2198at 897.346 kb on + strand, within GFF2198at 897.346 kb on + strand, within GFF2198at 897.346 kb on + strand, within GFF2198at 897.346 kb on + strand, within GFF2198at 897.347 kb on - strand, within GFF2198at 897.453 kb on - strand, within GFF2198at 897.453 kb on - strand, within GFF2198at 897.782 kb on - strandat 897.794 kb on - strandat 897.794 kb on - strandat 897.794 kb on - strandat 897.920 kb on - strandat 897.938 kb on - strandat 897.938 kb on - strandat 897.938 kb on - strandat 897.938 kb on - strandat 898.125 kb on - strand, within GFF2199at 898.138 kb on + strand, within GFF2199at 898.139 kb on - strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.190 kb on - strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.262 kb on + strand, within GFF2199at 898.308 kb on + strand, within GFF2199at 898.309 kb on - strand, within GFF2199at 898.322 kb on + strand, within GFF2199at 898.323 kb on - strand, within GFF2199at 898.323 kb on - strand, within GFF2199at 898.574 kb on - strand, within GFF2199at 898.594 kb on + strand, within GFF2199at 898.594 kb on + strand, within GFF2199at 898.596 kb on + strand, within GFF2199at 898.625 kb on + strand, within GFF2199at 898.626 kb on - strand, within GFF2199at 898.692 kb on + strand, within GFF2199at 898.692 kb on + strand, within GFF2199at 898.808 kb on + strand, within GFF2199at 898.809 kb on - strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.927 kb on - strand, within GFF2199at 898.927 kb on - strand, within GFF2199at 898.932 kb on + strand, within GFF2199at 898.994 kb on + strandat 898.995 kb on - strandat 898.995 kb on - strandat 898.995 kb on - strandat 899.078 kb on + strandat 899.156 kb on + strandat 899.157 kb on - strandat 899.157 kb on - strandat 899.157 kb on - strandat 899.157 kb on - strandat 899.286 kb on - strandat 899.345 kb on + strandat 899.346 kb on - strandat 899.579 kb on + strand, within GFF2200at 899.579 kb on + strand, within GFF2200at 899.580 kb on - strand, within GFF2200at 899.580 kb on - strand, within GFF2200at 899.652 kb on - strand, within GFF2200at 899.652 kb on - strand, within GFF2200at 899.678 kb on + strand, within GFF2200at 899.678 kb on + strand, within GFF2200at 899.679 kb on - strand, within GFF2200at 899.679 kb on - strand, within GFF2200at 899.679 kb on - strand, within GFF2200at 899.681 kb on + strand, within GFF2200at 899.795 kb on + strand, within GFF2200at 899.846 kb on + strand, within GFF2200at 899.846 kb on + strand, within GFF2200at 899.846 kb on + strand, within GFF2200at 900.018 kb on - strand, within GFF2200

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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896,953 + GFF2198 0.34 -1.4
896,953 + GFF2198 0.34 +0.6
896,953 + GFF2198 0.34 -0.2
897,019 + GFF2198 0.39 -0.2
897,019 + GFF2198 0.39 -0.2
897,020 - GFF2198 0.39 +0.1
897,020 - GFF2198 0.39 -0.3
897,020 - GFF2198 0.39 -0.8
897,020 - GFF2198 0.39 +0.9
897,201 + GFF2198 0.51 +0.1
897,201 + GFF2198 0.51 +0.1
897,202 - GFF2198 0.51 -0.3
897,331 + GFF2198 0.60 +0.4
897,331 + GFF2198 0.60 +0.0
897,331 + GFF2198 0.60 +0.0
897,332 - GFF2198 0.60 +0.4
897,332 - GFF2198 0.60 -1.2
897,346 + GFF2198 0.61 +0.5
897,346 + GFF2198 0.61 +0.3
897,346 + GFF2198 0.61 +0.3
897,346 + GFF2198 0.61 -1.4
897,347 - GFF2198 0.61 +0.9
897,453 - GFF2198 0.68 +0.1
897,453 - GFF2198 0.68 -0.3
897,782 - +0.1
897,794 - +0.5
897,794 - -0.3
897,794 - +0.4
897,920 - +1.3
897,938 - -2.3
897,938 - -0.9
897,938 - -0.4
897,938 - -0.7
898,125 - GFF2199 0.15 +0.6
898,138 + GFF2199 0.17 +1.1
898,139 - GFF2199 0.17 -0.6
898,189 + GFF2199 0.21 -1.6
898,189 + GFF2199 0.21 -0.5
898,189 + GFF2199 0.21 +0.1
898,190 - GFF2199 0.21 -0.5
898,199 + GFF2199 0.22 +0.7
898,199 + GFF2199 0.22 +1.6
898,199 + GFF2199 0.22 +0.4
898,199 + GFF2199 0.22 +0.3
898,199 + GFF2199 0.22 +0.4
898,199 + GFF2199 0.22 +0.7
898,200 - GFF2199 0.22 +0.2
898,200 - GFF2199 0.22 -0.2
898,200 - GFF2199 0.22 +0.2
898,200 - GFF2199 0.22 -0.9
898,200 - GFF2199 0.22 -0.2
898,200 - GFF2199 0.22 -1.0
898,200 - GFF2199 0.22 -0.1
898,254 + GFF2199 0.27 +0.6
898,254 + GFF2199 0.27 -0.1
898,254 + GFF2199 0.27 -1.3
898,255 - GFF2199 0.27 +0.2
898,255 - GFF2199 0.27 +1.7
898,255 - GFF2199 0.27 -0.7
898,255 - GFF2199 0.27 +0.4
898,262 + GFF2199 0.28 +0.0
898,308 + GFF2199 0.32 +0.8
898,309 - GFF2199 0.32 -0.2
898,322 + GFF2199 0.33 +0.1
898,323 - GFF2199 0.33 -0.3
898,323 - GFF2199 0.33 -1.1
898,574 - GFF2199 0.55 +1.3
898,594 + GFF2199 0.57 +1.6
898,594 + GFF2199 0.57 -1.1
898,596 + GFF2199 0.57 -2.0
898,625 + GFF2199 0.60 -1.0
898,626 - GFF2199 0.60 -0.9
898,692 + GFF2199 0.66 -0.1
898,692 + GFF2199 0.66 +0.3
898,808 + GFF2199 0.76 +0.6
898,809 - GFF2199 0.76 -1.9
898,926 + GFF2199 0.86 +0.8
898,926 + GFF2199 0.86 +1.7
898,926 + GFF2199 0.86 -0.1
898,926 + GFF2199 0.86 +0.8
898,927 - GFF2199 0.86 +0.0
898,927 - GFF2199 0.86 -0.5
898,932 + GFF2199 0.87 +0.7
898,994 + -0.0
898,995 - +0.1
898,995 - -0.6
898,995 - +0.4
899,078 + -0.9
899,156 + +0.8
899,157 - -0.3
899,157 - -1.5
899,157 - -0.1
899,157 - +0.2
899,286 - -0.4
899,345 + +0.1
899,346 - -1.0
899,579 + GFF2200 0.16 -0.1
899,579 + GFF2200 0.16 +0.1
899,580 - GFF2200 0.16 -1.7
899,580 - GFF2200 0.16 +0.0
899,652 - GFF2200 0.19 -1.4
899,652 - GFF2200 0.19 -0.4
899,678 + GFF2200 0.20 +0.1
899,678 + GFF2200 0.20 +1.5
899,679 - GFF2200 0.20 +2.8
899,679 - GFF2200 0.20 -0.4
899,679 - GFF2200 0.20 -2.8
899,681 + GFF2200 0.20 +0.4
899,795 + GFF2200 0.23 -1.1
899,846 + GFF2200 0.25 -0.5
899,846 + GFF2200 0.25 +0.9
899,846 + GFF2200 0.25 -0.7
900,018 - GFF2200 0.31 +0.5

Or see this region's nucleotide sequence