Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2191 and GFF2192 overlap by 4 nucleotides GFF2192 and GFF2193 are separated by 84 nucleotides
GFF2191 - hypothetical protein, at 886,565 to 887,779
GFF2191
GFF2192 - hypothetical protein, at 887,776 to 890,532
GFF2192
GFF2193 - Prophage integrase IntA, at 890,617 to 891,846
GFF2193
Position (kb) 887
888
889
890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 886.841 kb on - strand, within GFF2191 at 886.873 kb on - strand, within GFF2191 at 886.880 kb on + strand, within GFF2191 at 886.880 kb on + strand, within GFF2191 at 886.880 kb on + strand, within GFF2191 at 886.881 kb on - strand, within GFF2191 at 886.881 kb on - strand, within GFF2191 at 886.936 kb on + strand, within GFF2191 at 886.937 kb on - strand, within GFF2191 at 886.950 kb on + strand, within GFF2191 at 886.951 kb on - strand, within GFF2191 at 887.047 kb on - strand, within GFF2191 at 887.051 kb on - strand, within GFF2191 at 887.067 kb on + strand, within GFF2191 at 887.067 kb on + strand, within GFF2191 at 887.068 kb on - strand, within GFF2191 at 887.079 kb on + strand, within GFF2191 at 887.105 kb on - strand, within GFF2191 at 887.105 kb on - strand, within GFF2191 at 887.122 kb on - strand, within GFF2191 at 887.175 kb on + strand, within GFF2191 at 887.175 kb on + strand, within GFF2191 at 887.175 kb on + strand, within GFF2191 at 887.176 kb on - strand, within GFF2191 at 887.176 kb on - strand, within GFF2191 at 887.357 kb on - strand, within GFF2191 at 887.357 kb on - strand, within GFF2191 at 887.484 kb on - strand, within GFF2191 at 887.524 kb on - strand, within GFF2191 at 887.586 kb on + strand, within GFF2191 at 887.612 kb on - strand, within GFF2191 at 887.612 kb on - strand, within GFF2191 at 887.715 kb on - strand at 887.727 kb on + strand at 887.727 kb on + strand at 887.727 kb on + strand at 887.728 kb on - strand at 887.728 kb on - strand at 887.734 kb on + strand at 887.735 kb on - strand at 887.739 kb on + strand at 887.795 kb on - strand at 887.929 kb on + strand at 887.930 kb on - strand at 887.930 kb on - strand at 887.930 kb on - strand at 887.952 kb on + strand at 887.952 kb on + strand at 887.952 kb on + strand at 887.953 kb on - strand at 887.953 kb on - strand at 888.046 kb on + strand at 888.046 kb on + strand at 888.168 kb on + strand, within GFF2192 at 888.187 kb on - strand, within GFF2192 at 888.187 kb on - strand, within GFF2192 at 888.243 kb on - strand, within GFF2192 at 888.371 kb on + strand, within GFF2192 at 888.372 kb on - strand, within GFF2192 at 888.400 kb on + strand, within GFF2192 at 888.400 kb on + strand, within GFF2192 at 888.401 kb on - strand, within GFF2192 at 888.401 kb on - strand, within GFF2192 at 888.403 kb on + strand, within GFF2192 at 888.403 kb on + strand, within GFF2192 at 888.404 kb on - strand, within GFF2192 at 888.482 kb on + strand, within GFF2192 at 888.482 kb on + strand, within GFF2192 at 888.506 kb on + strand, within GFF2192 at 888.606 kb on + strand, within GFF2192 at 888.607 kb on - strand, within GFF2192 at 888.645 kb on - strand, within GFF2192 at 888.645 kb on - strand, within GFF2192 at 888.645 kb on - strand, within GFF2192 at 888.660 kb on + strand, within GFF2192 at 888.661 kb on - strand, within GFF2192 at 888.661 kb on - strand, within GFF2192 at 888.661 kb on - strand, within GFF2192 at 888.712 kb on - strand, within GFF2192 at 888.783 kb on + strand, within GFF2192 at 888.784 kb on - strand, within GFF2192 at 888.784 kb on - strand, within GFF2192 at 888.908 kb on + strand, within GFF2192 at 888.988 kb on + strand, within GFF2192 at 888.988 kb on + strand, within GFF2192 at 888.988 kb on + strand, within GFF2192 at 888.988 kb on + strand, within GFF2192 at 888.988 kb on + strand, within GFF2192 at 888.988 kb on + strand, within GFF2192 at 888.988 kb on + strand, within GFF2192 at 888.989 kb on - strand, within GFF2192 at 888.989 kb on - strand, within GFF2192 at 888.989 kb on - strand, within GFF2192 at 888.992 kb on + strand, within GFF2192 at 888.992 kb on + strand, within GFF2192 at 888.992 kb on + strand, within GFF2192 at 888.992 kb on + strand, within GFF2192 at 888.993 kb on - strand, within GFF2192 at 888.993 kb on - strand, within GFF2192 at 888.999 kb on + strand, within GFF2192 at 888.999 kb on + strand, within GFF2192 at 889.015 kb on + strand, within GFF2192 at 889.055 kb on - strand, within GFF2192 at 889.167 kb on + strand, within GFF2192 at 889.167 kb on + strand, within GFF2192 at 889.168 kb on - strand, within GFF2192 at 889.338 kb on + strand, within GFF2192 at 889.346 kb on + strand, within GFF2192 at 889.347 kb on - strand, within GFF2192 at 889.347 kb on - strand, within GFF2192 at 889.347 kb on - strand, within GFF2192 at 889.526 kb on + strand, within GFF2192 at 889.526 kb on + strand, within GFF2192 at 889.527 kb on - strand, within GFF2192 at 889.590 kb on + strand, within GFF2192 at 889.625 kb on + strand, within GFF2192 at 889.626 kb on - strand, within GFF2192 at 889.645 kb on - strand, within GFF2192 at 889.676 kb on + strand, within GFF2192 at 889.706 kb on + strand, within GFF2192 at 889.706 kb on + strand, within GFF2192 at 889.706 kb on + strand, within GFF2192 at 889.707 kb on - strand, within GFF2192 at 889.707 kb on - strand, within GFF2192 at 889.707 kb on - strand, within GFF2192 at 889.711 kb on + strand, within GFF2192 at 889.711 kb on + strand, within GFF2192 at 889.711 kb on + strand, within GFF2192 at 889.712 kb on - strand, within GFF2192 at 889.712 kb on - strand, within GFF2192 at 889.712 kb on - strand, within GFF2192 at 889.712 kb on - strand, within GFF2192 at 889.752 kb on + strand, within GFF2192 at 889.752 kb on + strand, within GFF2192 at 889.752 kb on + strand, within GFF2192 at 889.753 kb on - strand, within GFF2192 at 889.753 kb on - strand, within GFF2192 at 889.879 kb on - strand, within GFF2192 at 889.910 kb on + strand, within GFF2192 at 889.923 kb on + strand, within GFF2192 at 889.981 kb on - strand, within GFF2192 at 890.003 kb on + strand, within GFF2192 at 890.003 kb on + strand, within GFF2192 at 890.003 kb on + strand, within GFF2192 at 890.219 kb on + strand, within GFF2192 at 890.219 kb on + strand, within GFF2192 at 890.220 kb on - strand, within GFF2192 at 890.220 kb on - strand, within GFF2192 at 890.255 kb on + strand, within GFF2192 at 890.261 kb on + strand at 890.261 kb on + strand at 890.262 kb on - strand at 890.262 kb on - strand at 890.308 kb on + strand at 890.308 kb on + strand at 890.308 kb on + strand at 890.309 kb on - strand at 890.309 kb on - strand at 890.354 kb on + strand at 890.354 kb on + strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.426 kb on + strand at 890.427 kb on - strand at 890.462 kb on + strand at 890.471 kb on + strand at 890.471 kb on + strand at 890.471 kb on + strand at 890.471 kb on + strand at 890.471 kb on + strand at 890.472 kb on - strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.496 kb on + strand at 890.496 kb on + strand at 890.618 kb on + strand at 890.684 kb on + strand at 890.707 kb on + strand at 890.707 kb on + strand at 890.708 kb on - strand at 891.013 kb on + strand, within GFF2193 at 891.013 kb on + strand, within GFF2193 at 891.146 kb on + strand, within GFF2193 at 891.146 kb on + strand, within GFF2193 at 891.147 kb on - strand, within GFF2193 at 891.147 kb on - strand, within GFF2193 at 891.147 kb on - strand, within GFF2193 at 891.147 kb on - strand, within GFF2193 at 891.198 kb on + strand, within GFF2193 at 891.198 kb on + strand, within GFF2193 at 891.199 kb on - strand, within GFF2193 at 891.269 kb on - strand, within GFF2193 at 891.398 kb on + strand, within GFF2193 at 891.504 kb on + strand, within GFF2193
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 886,841 - GFF2191 0.23 -0.1 886,873 - GFF2191 0.25 -1.9 886,880 + GFF2191 0.26 +0.1 886,880 + GFF2191 0.26 -1.0 886,880 + GFF2191 0.26 +0.3 886,881 - GFF2191 0.26 +0.1 886,881 - GFF2191 0.26 +0.1 886,936 + GFF2191 0.31 -0.9 886,937 - GFF2191 0.31 -0.3 886,950 + GFF2191 0.32 -0.8 886,951 - GFF2191 0.32 -0.8 887,047 - GFF2191 0.40 -0.5 887,051 - GFF2191 0.40 -0.1 887,067 + GFF2191 0.41 -0.7 887,067 + GFF2191 0.41 -1.4 887,068 - GFF2191 0.41 +0.3 887,079 + GFF2191 0.42 -1.0 887,105 - GFF2191 0.44 -1.3 887,105 - GFF2191 0.44 -0.8 887,122 - GFF2191 0.46 +0.3 887,175 + GFF2191 0.50 -2.3 887,175 + GFF2191 0.50 +0.3 887,175 + GFF2191 0.50 -0.7 887,176 - GFF2191 0.50 -1.0 887,176 - GFF2191 0.50 +0.6 887,357 - GFF2191 0.65 -1.6 887,357 - GFF2191 0.65 +0.7 887,484 - GFF2191 0.76 +0.6 887,524 - GFF2191 0.79 +1.1 887,586 + GFF2191 0.84 -1.1 887,612 - GFF2191 0.86 -2.0 887,612 - GFF2191 0.86 +0.3 887,715 - -0.3 887,727 + -1.0 887,727 + +0.1 887,727 + -0.1 887,728 - +0.6 887,728 - -1.1 887,734 + -0.3 887,735 - -0.5 887,739 + -0.7 887,795 - -0.0 887,929 + +0.4 887,930 - -0.9 887,930 - +0.4 887,930 - -0.6 887,952 + +1.3 887,952 + +1.2 887,952 + +0.6 887,953 - -0.5 887,953 - +0.1 888,046 + +0.1 888,046 + -0.8 888,168 + GFF2192 0.14 +1.0 888,187 - GFF2192 0.15 +0.3 888,187 - GFF2192 0.15 -0.1 888,243 - GFF2192 0.17 +1.4 888,371 + GFF2192 0.22 -0.5 888,372 - GFF2192 0.22 +0.2 888,400 + GFF2192 0.23 -0.9 888,400 + GFF2192 0.23 -0.6 888,401 - GFF2192 0.23 -1.6 888,401 - GFF2192 0.23 -1.4 888,403 + GFF2192 0.23 -0.3 888,403 + GFF2192 0.23 +1.1 888,404 - GFF2192 0.23 -1.2 888,482 + GFF2192 0.26 -0.5 888,482 + GFF2192 0.26 -0.5 888,506 + GFF2192 0.26 -0.3 888,606 + GFF2192 0.30 -0.6 888,607 - GFF2192 0.30 +1.5 888,645 - GFF2192 0.32 -0.4 888,645 - GFF2192 0.32 -0.2 888,645 - GFF2192 0.32 -2.0 888,660 + GFF2192 0.32 +0.2 888,661 - GFF2192 0.32 -0.1 888,661 - GFF2192 0.32 -2.0 888,661 - GFF2192 0.32 -0.8 888,712 - GFF2192 0.34 -0.3 888,783 + GFF2192 0.37 -0.9 888,784 - GFF2192 0.37 -0.2 888,784 - GFF2192 0.37 +0.6 888,908 + GFF2192 0.41 -0.5 888,988 + GFF2192 0.44 -0.1 888,988 + GFF2192 0.44 -0.0 888,988 + GFF2192 0.44 +0.8 888,988 + GFF2192 0.44 -0.3 888,988 + GFF2192 0.44 +0.0 888,988 + GFF2192 0.44 +0.3 888,988 + GFF2192 0.44 +0.6 888,989 - GFF2192 0.44 +0.6 888,989 - GFF2192 0.44 -0.3 888,989 - GFF2192 0.44 -0.6 888,992 + GFF2192 0.44 -1.3 888,992 + GFF2192 0.44 -0.8 888,992 + GFF2192 0.44 +0.2 888,992 + GFF2192 0.44 -0.8 888,993 - GFF2192 0.44 -0.3 888,993 - GFF2192 0.44 +1.0 888,999 + GFF2192 0.44 +1.8 888,999 + GFF2192 0.44 -0.9 889,015 + GFF2192 0.45 -0.6 889,055 - GFF2192 0.46 -0.5 889,167 + GFF2192 0.50 -0.1 889,167 + GFF2192 0.50 -0.9 889,168 - GFF2192 0.50 -0.2 889,338 + GFF2192 0.57 -0.4 889,346 + GFF2192 0.57 -0.1 889,347 - GFF2192 0.57 +0.7 889,347 - GFF2192 0.57 -1.1 889,347 - GFF2192 0.57 -1.2 889,526 + GFF2192 0.63 -1.1 889,526 + GFF2192 0.63 +0.5 889,527 - GFF2192 0.64 -0.2 889,590 + GFF2192 0.66 +0.7 889,625 + GFF2192 0.67 -0.8 889,626 - GFF2192 0.67 +0.4 889,645 - GFF2192 0.68 +0.1 889,676 + GFF2192 0.69 -2.4 889,706 + GFF2192 0.70 -0.9 889,706 + GFF2192 0.70 -1.4 889,706 + GFF2192 0.70 -1.3 889,707 - GFF2192 0.70 +1.3 889,707 - GFF2192 0.70 -1.2 889,707 - GFF2192 0.70 -0.9 889,711 + GFF2192 0.70 -0.8 889,711 + GFF2192 0.70 -0.5 889,711 + GFF2192 0.70 -1.5 889,712 - GFF2192 0.70 -1.5 889,712 - GFF2192 0.70 +0.3 889,712 - GFF2192 0.70 -0.7 889,712 - GFF2192 0.70 +1.1 889,752 + GFF2192 0.72 -0.6 889,752 + GFF2192 0.72 -0.8 889,752 + GFF2192 0.72 -0.9 889,753 - GFF2192 0.72 -0.6 889,753 - GFF2192 0.72 +1.1 889,879 - GFF2192 0.76 +0.9 889,910 + GFF2192 0.77 +0.5 889,923 + GFF2192 0.78 +0.1 889,981 - GFF2192 0.80 -1.3 890,003 + GFF2192 0.81 +0.4 890,003 + GFF2192 0.81 -0.2 890,003 + GFF2192 0.81 -1.3 890,219 + GFF2192 0.89 -1.6 890,219 + GFF2192 0.89 -0.1 890,220 - GFF2192 0.89 +0.0 890,220 - GFF2192 0.89 -0.3 890,255 + GFF2192 0.90 -1.3 890,261 + -0.4 890,261 + +0.8 890,262 - -0.3 890,262 - +0.3 890,308 + -1.0 890,308 + +0.1 890,308 + +0.1 890,309 - -0.4 890,309 - -0.3 890,354 + -0.5 890,354 + -0.4 890,355 - -0.2 890,355 - -1.7 890,355 - +0.5 890,355 - -1.0 890,355 - -0.8 890,355 - +0.2 890,426 + -0.4 890,427 - +0.0 890,462 + -0.2 890,471 + +0.4 890,471 + -0.5 890,471 + -0.4 890,471 + -0.3 890,471 + -0.8 890,472 - -0.6 890,478 + -0.7 890,478 + +0.3 890,478 + -0.2 890,478 + +1.2 890,478 + +0.3 890,478 + +0.4 890,478 + +1.2 890,479 - -0.3 890,479 - -0.6 890,479 - -0.4 890,479 - +1.3 890,479 - -0.1 890,479 - +0.3 890,496 + +0.8 890,496 + +0.6 890,618 + -0.6 890,684 + +0.3 890,707 + -0.3 890,707 + -0.3 890,708 - -0.7 891,013 + GFF2193 0.32 +0.5 891,013 + GFF2193 0.32 +1.3 891,146 + GFF2193 0.43 -0.1 891,146 + GFF2193 0.43 -2.4 891,147 - GFF2193 0.43 -1.1 891,147 - GFF2193 0.43 +0.9 891,147 - GFF2193 0.43 -0.1 891,147 - GFF2193 0.43 +0.7 891,198 + GFF2193 0.47 -1.5 891,198 + GFF2193 0.47 -0.0 891,199 - GFF2193 0.47 -1.4 891,269 - GFF2193 0.53 -0.7 891,398 + GFF2193 0.63 -0.0 891,504 + GFF2193 0.72 -0.5
Or see this region's nucleotide sequence