Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2178 and GFF2179 are separated by 105 nucleotides GFF2179 and GFF2180 overlap by 4 nucleotides GFF2180 and GFF2181 are separated by 288 nucleotides
GFF2178 - hypothetical protein, at 877,516 to 878,439
GFF2178
GFF2179 - Phthiocerol synthesis polyketide synthase type I PpsC, at 878,545 to 879,531
GFF2179
GFF2180 - hypothetical protein, at 879,528 to 880,076
GFF2180
GFF2181 - HTH-type transcriptional regulator DmlR, at 880,365 to 881,282
GFF2181
Position (kb) 878
879
880 Strain fitness (log2 ratio) -1
0
1
2 at 877.661 kb on + strand, within GFF2178 at 877.661 kb on + strand, within GFF2178 at 877.661 kb on + strand, within GFF2178 at 877.700 kb on + strand, within GFF2178 at 877.700 kb on + strand, within GFF2178 at 877.701 kb on - strand, within GFF2178 at 877.701 kb on - strand, within GFF2178 at 877.875 kb on + strand, within GFF2178 at 877.876 kb on - strand, within GFF2178 at 877.876 kb on - strand, within GFF2178 at 877.876 kb on - strand, within GFF2178 at 877.877 kb on + strand, within GFF2178 at 877.877 kb on + strand, within GFF2178 at 877.877 kb on + strand, within GFF2178 at 877.877 kb on + strand, within GFF2178 at 877.877 kb on + strand, within GFF2178 at 877.877 kb on + strand, within GFF2178 at 877.878 kb on - strand, within GFF2178 at 877.878 kb on - strand, within GFF2178 at 878.144 kb on + strand, within GFF2178 at 878.144 kb on + strand, within GFF2178 at 878.325 kb on - strand, within GFF2178 at 878.348 kb on + strand at 878.348 kb on + strand at 878.349 kb on - strand at 878.349 kb on - strand at 878.413 kb on + strand at 878.414 kb on - strand at 878.477 kb on - strand at 878.477 kb on - strand at 878.630 kb on + strand at 878.630 kb on + strand at 878.874 kb on - strand, within GFF2179 at 878.961 kb on - strand, within GFF2179 at 878.961 kb on - strand, within GFF2179 at 879.108 kb on + strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.239 kb on + strand, within GFF2179 at 879.240 kb on - strand, within GFF2179 at 879.248 kb on + strand, within GFF2179 at 879.249 kb on - strand, within GFF2179 at 879.249 kb on - strand, within GFF2179 at 879.365 kb on + strand, within GFF2179 at 879.381 kb on - strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.384 kb on - strand, within GFF2179 at 879.677 kb on - strand, within GFF2180 at 879.712 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.821 kb on - strand, within GFF2180 at 879.847 kb on + strand, within GFF2180 at 879.847 kb on + strand, within GFF2180 at 879.848 kb on - strand, within GFF2180 at 879.848 kb on - strand, within GFF2180 at 879.961 kb on + strand, within GFF2180 at 880.094 kb on - strand at 880.094 kb on - strand at 880.147 kb on - strand at 880.184 kb on + strand at 880.211 kb on + strand at 880.212 kb on - strand at 880.212 kb on - strand at 880.212 kb on - strand at 880.298 kb on + strand at 880.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 877,661 + GFF2178 0.16 +0.5 877,661 + GFF2178 0.16 -0.4 877,661 + GFF2178 0.16 -0.8 877,700 + GFF2178 0.20 -0.3 877,700 + GFF2178 0.20 +0.7 877,701 - GFF2178 0.20 +1.3 877,701 - GFF2178 0.20 +0.4 877,875 + GFF2178 0.39 -0.1 877,876 - GFF2178 0.39 -1.4 877,876 - GFF2178 0.39 +0.1 877,876 - GFF2178 0.39 +0.1 877,877 + GFF2178 0.39 -0.3 877,877 + GFF2178 0.39 -1.4 877,877 + GFF2178 0.39 -0.0 877,877 + GFF2178 0.39 -0.3 877,877 + GFF2178 0.39 +0.1 877,877 + GFF2178 0.39 -0.0 877,878 - GFF2178 0.39 +0.3 877,878 - GFF2178 0.39 -0.1 878,144 + GFF2178 0.68 -1.0 878,144 + GFF2178 0.68 +0.1 878,325 - GFF2178 0.88 -0.1 878,348 + -0.0 878,348 + +0.1 878,349 - -0.2 878,349 - -0.3 878,413 + -0.8 878,414 - +1.8 878,477 - +0.9 878,477 - -0.5 878,630 + +1.2 878,630 + -1.3 878,874 - GFF2179 0.33 -1.4 878,961 - GFF2179 0.42 +0.4 878,961 - GFF2179 0.42 +0.3 879,108 + GFF2179 0.57 -0.3 879,109 - GFF2179 0.57 +1.3 879,109 - GFF2179 0.57 -1.3 879,109 - GFF2179 0.57 -0.3 879,109 - GFF2179 0.57 +0.1 879,109 - GFF2179 0.57 +0.2 879,239 + GFF2179 0.70 +1.4 879,240 - GFF2179 0.70 -1.1 879,248 + GFF2179 0.71 +0.5 879,249 - GFF2179 0.71 -0.5 879,249 - GFF2179 0.71 -0.4 879,365 + GFF2179 0.83 -0.5 879,381 - GFF2179 0.85 -0.0 879,383 + GFF2179 0.85 +0.1 879,383 + GFF2179 0.85 -0.5 879,383 + GFF2179 0.85 -1.0 879,384 - GFF2179 0.85 +0.2 879,677 - GFF2180 0.27 -0.1 879,712 + GFF2180 0.34 -1.0 879,820 + GFF2180 0.53 -0.1 879,820 + GFF2180 0.53 +1.1 879,820 + GFF2180 0.53 -0.2 879,820 + GFF2180 0.53 -0.3 879,821 - GFF2180 0.53 +0.0 879,847 + GFF2180 0.58 +0.0 879,847 + GFF2180 0.58 +0.1 879,848 - GFF2180 0.58 -1.5 879,848 - GFF2180 0.58 +0.8 879,961 + GFF2180 0.79 -1.5 880,094 - -0.3 880,094 - -0.3 880,147 - -0.7 880,184 + -0.7 880,211 + -0.1 880,212 - -0.0 880,212 - -0.9 880,212 - +1.2 880,298 + -1.0 880,299 - -0.4
Or see this region's nucleotide sequence