Strain Fitness in Xanthobacter sp. DMC5 around GFF2174

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2173 and GFF2174 are separated by 35 nucleotidesGFF2174 and GFF2175 are separated by 144 nucleotidesGFF2175 and GFF2176 are separated by 107 nucleotides GFF2173 - Colistin resistance protein EmrB, at 871,616 to 873,229 GFF2173 GFF2174 - Colistin resistance protein EmrA, at 873,265 to 874,515 GFF2174 GFF2175 - hypothetical protein, at 874,660 to 875,343 GFF2175 GFF2176 - L-lactate dehydrogenase, at 875,451 to 876,626 GFF2176 Position (kb) 873 874 875Strain fitness (log2 ratio) -2 -1 0 1 2at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.298 kb on + strand, within GFF2173at 872.299 kb on - strand, within GFF2173at 872.299 kb on - strand, within GFF2173at 872.299 kb on - strand, within GFF2173at 872.299 kb on - strand, within GFF2173at 872.299 kb on - strand, within GFF2173at 872.299 kb on - strand, within GFF2173at 872.299 kb on - strand, within GFF2173at 872.299 kb on - strand, within GFF2173at 872.310 kb on + strand, within GFF2173at 872.311 kb on - strand, within GFF2173at 872.311 kb on - strand, within GFF2173at 872.311 kb on - strand, within GFF2173at 872.466 kb on + strand, within GFF2173at 872.466 kb on + strand, within GFF2173at 872.466 kb on + strand, within GFF2173at 872.466 kb on + strand, within GFF2173at 872.467 kb on - strand, within GFF2173at 872.467 kb on - strand, within GFF2173at 872.467 kb on - strand, within GFF2173at 872.467 kb on - strand, within GFF2173at 872.467 kb on - strand, within GFF2173at 872.467 kb on - strand, within GFF2173at 872.467 kb on - strand, within GFF2173at 872.467 kb on - strand, within GFF2173at 872.688 kb on + strand, within GFF2173at 872.689 kb on - strand, within GFF2173at 872.785 kb on - strand, within GFF2173at 872.844 kb on + strand, within GFF2173at 872.994 kb on + strand, within GFF2173at 872.994 kb on + strand, within GFF2173at 872.995 kb on - strand, within GFF2173at 872.995 kb on - strand, within GFF2173at 872.995 kb on - strand, within GFF2173at 872.995 kb on - strand, within GFF2173at 872.995 kb on - strand, within GFF2173at 873.018 kb on - strand, within GFF2173at 873.524 kb on + strand, within GFF2174at 873.536 kb on + strand, within GFF2174at 873.536 kb on + strand, within GFF2174at 873.537 kb on - strand, within GFF2174at 873.537 kb on - strand, within GFF2174at 873.537 kb on - strand, within GFF2174at 873.602 kb on + strand, within GFF2174at 873.602 kb on + strand, within GFF2174at 873.602 kb on + strand, within GFF2174at 873.602 kb on + strand, within GFF2174at 873.602 kb on + strand, within GFF2174at 873.603 kb on - strand, within GFF2174at 873.886 kb on + strand, within GFF2174at 874.101 kb on - strand, within GFF2174at 874.101 kb on - strand, within GFF2174at 874.101 kb on - strand, within GFF2174at 874.179 kb on - strand, within GFF2174at 874.223 kb on + strand, within GFF2174at 874.224 kb on - strand, within GFF2174at 874.224 kb on - strand, within GFF2174at 874.224 kb on - strand, within GFF2174at 874.277 kb on + strand, within GFF2174at 874.277 kb on + strand, within GFF2174at 874.576 kb on + strandat 874.578 kb on + strandat 874.731 kb on + strand, within GFF2175at 874.731 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 875.433 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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872,298 + GFF2173 0.42 +0.7
872,298 + GFF2173 0.42 -0.2
872,298 + GFF2173 0.42 -0.4
872,298 + GFF2173 0.42 +0.3
872,298 + GFF2173 0.42 +0.0
872,298 + GFF2173 0.42 +1.6
872,298 + GFF2173 0.42 -0.4
872,298 + GFF2173 0.42 -0.7
872,298 + GFF2173 0.42 -0.6
872,298 + GFF2173 0.42 +1.3
872,298 + GFF2173 0.42 -0.7
872,298 + GFF2173 0.42 -0.3
872,298 + GFF2173 0.42 -0.1
872,299 - GFF2173 0.42 +0.2
872,299 - GFF2173 0.42 -2.3
872,299 - GFF2173 0.42 -0.3
872,299 - GFF2173 0.42 +0.4
872,299 - GFF2173 0.42 +0.4
872,299 - GFF2173 0.42 -0.8
872,299 - GFF2173 0.42 +1.1
872,299 - GFF2173 0.42 -0.5
872,310 + GFF2173 0.43 +0.5
872,311 - GFF2173 0.43 -0.6
872,311 - GFF2173 0.43 +1.9
872,311 - GFF2173 0.43 -0.0
872,466 + GFF2173 0.53 +0.4
872,466 + GFF2173 0.53 +0.8
872,466 + GFF2173 0.53 +0.4
872,466 + GFF2173 0.53 -0.6
872,467 - GFF2173 0.53 -0.1
872,467 - GFF2173 0.53 -0.5
872,467 - GFF2173 0.53 -0.9
872,467 - GFF2173 0.53 +0.6
872,467 - GFF2173 0.53 -0.8
872,467 - GFF2173 0.53 +0.5
872,467 - GFF2173 0.53 -1.9
872,467 - GFF2173 0.53 -0.3
872,688 + GFF2173 0.66 -0.4
872,689 - GFF2173 0.66 +0.5
872,785 - GFF2173 0.72 +2.4
872,844 + GFF2173 0.76 -0.4
872,994 + GFF2173 0.85 -0.2
872,994 + GFF2173 0.85 -0.7
872,995 - GFF2173 0.85 +1.1
872,995 - GFF2173 0.85 +0.3
872,995 - GFF2173 0.85 +0.3
872,995 - GFF2173 0.85 +1.5
872,995 - GFF2173 0.85 +0.6
873,018 - GFF2173 0.87 -0.6
873,524 + GFF2174 0.21 -0.0
873,536 + GFF2174 0.22 +0.4
873,536 + GFF2174 0.22 -0.4
873,537 - GFF2174 0.22 -0.3
873,537 - GFF2174 0.22 -0.8
873,537 - GFF2174 0.22 -1.7
873,602 + GFF2174 0.27 +1.2
873,602 + GFF2174 0.27 +0.5
873,602 + GFF2174 0.27 -1.4
873,602 + GFF2174 0.27 -1.5
873,602 + GFF2174 0.27 +0.3
873,603 - GFF2174 0.27 +0.7
873,886 + GFF2174 0.50 -0.7
874,101 - GFF2174 0.67 -0.5
874,101 - GFF2174 0.67 -1.1
874,101 - GFF2174 0.67 +0.8
874,179 - GFF2174 0.73 +1.8
874,223 + GFF2174 0.77 -0.2
874,224 - GFF2174 0.77 +0.4
874,224 - GFF2174 0.77 -0.6
874,224 - GFF2174 0.77 -0.0
874,277 + GFF2174 0.81 +0.0
874,277 + GFF2174 0.81 -0.2
874,576 + +1.6
874,578 + -1.3
874,731 + GFF2175 0.10 +0.3
874,731 + GFF2175 0.10 +1.9
874,855 + GFF2175 0.29 +0.7
874,855 + GFF2175 0.29 -0.8
874,855 + GFF2175 0.29 -0.5
874,855 + GFF2175 0.29 +0.1
874,855 + GFF2175 0.29 -1.3
874,855 + GFF2175 0.29 -0.0
874,855 + GFF2175 0.29 +0.6
874,855 + GFF2175 0.29 +1.4
874,856 - GFF2175 0.29 +1.3
874,856 - GFF2175 0.29 +0.5
874,856 - GFF2175 0.29 +0.2
874,856 - GFF2175 0.29 -0.2
874,856 - GFF2175 0.29 +0.9
874,856 - GFF2175 0.29 +1.5
874,856 - GFF2175 0.29 +0.9
875,433 + +0.2

Or see this region's nucleotide sequence