Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2170 and GFF2171 are separated by 3 nucleotides GFF2171 and GFF2172 overlap by 4 nucleotides GFF2172 and GFF2173 are separated by 256 nucleotides
GFF2170 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 867,551 to 869,764
GFF2170
GFF2171 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 869,768 to 870,718
GFF2171
GFF2172 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 870,715 to 871,359
GFF2172
GFF2173 - Colistin resistance protein EmrB, at 871,616 to 873,229
GFF2173
Position (kb) 869
870
871 Strain fitness (log2 ratio) -1
0
1
2 at 868.770 kb on + strand, within GFF2170 at 868.771 kb on - strand, within GFF2170 at 868.771 kb on - strand, within GFF2170 at 869.039 kb on - strand, within GFF2170 at 869.040 kb on + strand, within GFF2170 at 869.041 kb on - strand, within GFF2170 at 869.041 kb on - strand, within GFF2170 at 869.041 kb on - strand, within GFF2170 at 869.041 kb on - strand, within GFF2170 at 869.041 kb on - strand, within GFF2170 at 869.041 kb on - strand, within GFF2170 at 869.211 kb on + strand, within GFF2170 at 869.211 kb on + strand, within GFF2170 at 869.211 kb on + strand, within GFF2170 at 869.211 kb on + strand, within GFF2170 at 869.212 kb on - strand, within GFF2170 at 869.212 kb on - strand, within GFF2170 at 869.212 kb on - strand, within GFF2170 at 869.212 kb on - strand, within GFF2170 at 869.212 kb on - strand, within GFF2170 at 869.212 kb on - strand, within GFF2170 at 869.254 kb on + strand, within GFF2170 at 869.365 kb on - strand, within GFF2170 at 869.365 kb on - strand, within GFF2170 at 869.442 kb on + strand, within GFF2170 at 869.442 kb on + strand, within GFF2170 at 869.443 kb on - strand, within GFF2170 at 869.480 kb on - strand, within GFF2170 at 869.480 kb on - strand, within GFF2170 at 869.480 kb on - strand, within GFF2170 at 869.649 kb on + strand at 869.650 kb on - strand at 869.650 kb on - strand at 869.655 kb on + strand at 869.656 kb on - strand at 869.656 kb on - strand at 869.656 kb on - strand at 869.656 kb on - strand at 869.656 kb on - strand at 869.824 kb on - strand at 870.009 kb on + strand, within GFF2171 at 870.009 kb on + strand, within GFF2171 at 870.009 kb on + strand, within GFF2171 at 870.010 kb on - strand, within GFF2171 at 870.010 kb on - strand, within GFF2171 at 870.036 kb on + strand, within GFF2171 at 870.121 kb on + strand, within GFF2171 at 870.191 kb on - strand, within GFF2171 at 870.352 kb on - strand, within GFF2171 at 870.352 kb on - strand, within GFF2171 at 870.357 kb on + strand, within GFF2171 at 870.456 kb on + strand, within GFF2171 at 870.573 kb on - strand, within GFF2171 at 870.703 kb on - strand at 870.703 kb on - strand at 870.703 kb on - strand at 870.764 kb on + strand at 870.783 kb on + strand, within GFF2172 at 870.783 kb on + strand, within GFF2172 at 870.784 kb on - strand, within GFF2172 at 870.784 kb on - strand, within GFF2172 at 870.784 kb on - strand, within GFF2172 at 870.784 kb on - strand, within GFF2172 at 870.935 kb on + strand, within GFF2172 at 870.935 kb on + strand, within GFF2172 at 871.002 kb on - strand, within GFF2172 at 871.048 kb on + strand, within GFF2172 at 871.115 kb on + strand, within GFF2172 at 871.335 kb on + strand at 871.336 kb on - strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.708 kb on - strand at 871.708 kb on - strand at 871.708 kb on - strand at 871.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 868,770 + GFF2170 0.55 +0.2 868,771 - GFF2170 0.55 -0.7 868,771 - GFF2170 0.55 +0.2 869,039 - GFF2170 0.67 -0.1 869,040 + GFF2170 0.67 +0.8 869,041 - GFF2170 0.67 +1.6 869,041 - GFF2170 0.67 -0.0 869,041 - GFF2170 0.67 -0.6 869,041 - GFF2170 0.67 -0.6 869,041 - GFF2170 0.67 +0.2 869,041 - GFF2170 0.67 -1.3 869,211 + GFF2170 0.75 +1.8 869,211 + GFF2170 0.75 +0.1 869,211 + GFF2170 0.75 +0.4 869,211 + GFF2170 0.75 -0.3 869,212 - GFF2170 0.75 +0.4 869,212 - GFF2170 0.75 +0.2 869,212 - GFF2170 0.75 -0.5 869,212 - GFF2170 0.75 +0.3 869,212 - GFF2170 0.75 +0.1 869,212 - GFF2170 0.75 +0.2 869,254 + GFF2170 0.77 -1.5 869,365 - GFF2170 0.82 +0.1 869,365 - GFF2170 0.82 -1.0 869,442 + GFF2170 0.85 -0.5 869,442 + GFF2170 0.85 -0.5 869,443 - GFF2170 0.85 -0.3 869,480 - GFF2170 0.87 +2.3 869,480 - GFF2170 0.87 +0.6 869,480 - GFF2170 0.87 -0.4 869,649 + -0.5 869,650 - -0.9 869,650 - +0.5 869,655 + -1.4 869,656 - -0.1 869,656 - -0.3 869,656 - +0.3 869,656 - -0.7 869,656 - -0.6 869,824 - +0.9 870,009 + GFF2171 0.25 -0.3 870,009 + GFF2171 0.25 +0.2 870,009 + GFF2171 0.25 -1.4 870,010 - GFF2171 0.25 +0.3 870,010 - GFF2171 0.25 -0.4 870,036 + GFF2171 0.28 -1.0 870,121 + GFF2171 0.37 +1.6 870,191 - GFF2171 0.44 +0.1 870,352 - GFF2171 0.61 -0.2 870,352 - GFF2171 0.61 -0.0 870,357 + GFF2171 0.62 +2.1 870,456 + GFF2171 0.72 +0.9 870,573 - GFF2171 0.85 +0.3 870,703 - -0.0 870,703 - +0.4 870,703 - -0.4 870,764 + +0.2 870,783 + GFF2172 0.11 -0.9 870,783 + GFF2172 0.11 -0.7 870,784 - GFF2172 0.11 +1.5 870,784 - GFF2172 0.11 -1.4 870,784 - GFF2172 0.11 +0.3 870,784 - GFF2172 0.11 -0.8 870,935 + GFF2172 0.34 -0.5 870,935 + GFF2172 0.34 -0.0 871,002 - GFF2172 0.44 -0.6 871,048 + GFF2172 0.52 -1.0 871,115 + GFF2172 0.62 +0.9 871,335 + +0.5 871,336 - +0.7 871,707 + -0.2 871,707 + -0.9 871,707 + +0.5 871,707 + +0.9 871,707 + -0.4 871,707 + +0.3 871,708 - -0.7 871,708 - -0.5 871,708 - -0.8 871,708 - +0.3
Or see this region's nucleotide sequence