Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2104 and GFF2105 are separated by 78 nucleotides GFF2105 and GFF2106 overlap by 4 nucleotides GFF2106 and GFF2107 are separated by 137 nucleotides
GFF2104 - hypothetical protein, at 790,922 to 792,565
GFF2104
GFF2105 - Adaptive-response sensory-kinase SasA, at 792,644 to 793,966
GFF2105
GFF2106 - Transcriptional regulatory protein OmpR, at 793,963 to 794,676
GFF2106
GFF2107 - hypothetical protein, at 794,814 to 795,536
GFF2107
Position (kb) 792
793
794 Strain fitness (log2 ratio) -1
0
1 at 791.664 kb on + strand, within GFF2104 at 791.664 kb on + strand, within GFF2104 at 791.664 kb on + strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 792.140 kb on + strand, within GFF2104 at 792.255 kb on + strand, within GFF2104 at 792.255 kb on + strand, within GFF2104 at 792.255 kb on + strand, within GFF2104 at 792.256 kb on - strand, within GFF2104 at 792.256 kb on - strand, within GFF2104 at 792.256 kb on - strand, within GFF2104 at 792.256 kb on - strand, within GFF2104 at 792.357 kb on + strand, within GFF2104 at 792.594 kb on + strand at 792.642 kb on + strand at 792.642 kb on + strand at 792.643 kb on - strand at 792.643 kb on - strand at 792.930 kb on + strand, within GFF2105 at 792.930 kb on + strand, within GFF2105 at 792.930 kb on + strand, within GFF2105 at 792.931 kb on - strand, within GFF2105 at 793.123 kb on - strand, within GFF2105 at 793.123 kb on - strand, within GFF2105 at 793.139 kb on + strand, within GFF2105 at 793.139 kb on + strand, within GFF2105 at 793.484 kb on - strand, within GFF2105 at 793.733 kb on + strand, within GFF2105 at 793.734 kb on - strand, within GFF2105 at 793.760 kb on + strand, within GFF2105 at 793.760 kb on + strand, within GFF2105 at 793.761 kb on - strand, within GFF2105 at 793.761 kb on - strand, within GFF2105 at 793.875 kb on + strand at 793.994 kb on + strand at 793.995 kb on - strand at 793.995 kb on - strand at 794.166 kb on - strand, within GFF2106 at 794.183 kb on + strand, within GFF2106 at 794.183 kb on + strand, within GFF2106 at 794.184 kb on - strand, within GFF2106 at 794.184 kb on - strand, within GFF2106 at 794.184 kb on - strand, within GFF2106 at 794.184 kb on - strand, within GFF2106 at 794.461 kb on - strand, within GFF2106 at 794.461 kb on - strand, within GFF2106 at 794.461 kb on - strand, within GFF2106 at 794.704 kb on - strand at 794.706 kb on - strand at 794.747 kb on + strand at 794.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 791,664 + GFF2104 0.45 +0.9 791,664 + GFF2104 0.45 +0.1 791,664 + GFF2104 0.45 -0.4 791,665 - GFF2104 0.45 +0.2 791,665 - GFF2104 0.45 -1.4 791,665 - GFF2104 0.45 -0.3 791,665 - GFF2104 0.45 +1.1 791,665 - GFF2104 0.45 +0.9 792,140 + GFF2104 0.74 -1.1 792,255 + GFF2104 0.81 -0.1 792,255 + GFF2104 0.81 +0.1 792,255 + GFF2104 0.81 +0.0 792,256 - GFF2104 0.81 +0.6 792,256 - GFF2104 0.81 -0.4 792,256 - GFF2104 0.81 -0.8 792,256 - GFF2104 0.81 -0.6 792,357 + GFF2104 0.87 -0.5 792,594 + +0.5 792,642 + -1.5 792,642 + -0.2 792,643 - +0.9 792,643 - -0.5 792,930 + GFF2105 0.22 +0.0 792,930 + GFF2105 0.22 +0.6 792,930 + GFF2105 0.22 +0.8 792,931 - GFF2105 0.22 +0.9 793,123 - GFF2105 0.36 +0.0 793,123 - GFF2105 0.36 -0.0 793,139 + GFF2105 0.37 +0.6 793,139 + GFF2105 0.37 +0.0 793,484 - GFF2105 0.63 +0.0 793,733 + GFF2105 0.82 -0.5 793,734 - GFF2105 0.82 +0.6 793,760 + GFF2105 0.84 -0.2 793,760 + GFF2105 0.84 -0.7 793,761 - GFF2105 0.84 -0.4 793,761 - GFF2105 0.84 -1.0 793,875 + +0.2 793,994 + +0.1 793,995 - -0.5 793,995 - -0.5 794,166 - GFF2106 0.28 -1.7 794,183 + GFF2106 0.31 +0.8 794,183 + GFF2106 0.31 -1.2 794,184 - GFF2106 0.31 +0.1 794,184 - GFF2106 0.31 +0.8 794,184 - GFF2106 0.31 +0.6 794,184 - GFF2106 0.31 -0.3 794,461 - GFF2106 0.70 -0.2 794,461 - GFF2106 0.70 +1.1 794,461 - GFF2106 0.70 +0.3 794,704 - +0.1 794,706 - +0.2 794,747 + -0.3 794,748 - -0.4
Or see this region's nucleotide sequence