Strain Fitness in Xanthobacter sp. DMC5 around GFF2028

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2027 and GFF2028 overlap by 14 nucleotidesGFF2028 and GFF2029 are separated by 35 nucleotides GFF2027 - Putrescine--pyruvate aminotransferase, at 699,963 to 701,381 GFF2027 GFF2028 - D-malate dehydrogenase [decarboxylating], at 701,368 to 702,441 GFF2028 GFF2029 - Glutarate-semialdehyde dehydrogenase, at 702,477 to 703,970 GFF2029 Position (kb) 701 702 703Strain fitness (log2 ratio) -2 -1 0 1at 700.384 kb on + strand, within GFF2027at 700.442 kb on - strand, within GFF2027at 700.481 kb on - strand, within GFF2027at 700.481 kb on - strand, within GFF2027at 700.481 kb on - strand, within GFF2027at 700.481 kb on - strand, within GFF2027at 700.481 kb on - strand, within GFF2027at 700.801 kb on + strand, within GFF2027at 700.802 kb on - strand, within GFF2027at 700.802 kb on - strand, within GFF2027at 700.904 kb on - strand, within GFF2027at 700.973 kb on - strand, within GFF2027at 700.973 kb on - strand, within GFF2027at 701.017 kb on + strand, within GFF2027at 701.017 kb on + strand, within GFF2027at 701.017 kb on + strand, within GFF2027at 701.018 kb on - strand, within GFF2027at 701.018 kb on - strand, within GFF2027at 701.018 kb on - strand, within GFF2027at 701.110 kb on + strand, within GFF2027at 701.111 kb on - strand, within GFF2027at 701.575 kb on - strand, within GFF2028at 701.777 kb on + strand, within GFF2028at 701.777 kb on + strand, within GFF2028at 701.777 kb on + strand, within GFF2028at 701.777 kb on + strand, within GFF2028at 701.778 kb on - strand, within GFF2028at 701.837 kb on + strand, within GFF2028at 701.838 kb on - strand, within GFF2028at 701.988 kb on + strand, within GFF2028at 701.989 kb on - strand, within GFF2028at 701.989 kb on - strand, within GFF2028at 701.996 kb on + strand, within GFF2028at 701.996 kb on + strand, within GFF2028at 701.996 kb on + strand, within GFF2028at 701.997 kb on - strand, within GFF2028at 701.997 kb on - strand, within GFF2028at 702.131 kb on + strand, within GFF2028at 702.131 kb on + strand, within GFF2028at 702.131 kb on + strand, within GFF2028at 702.131 kb on + strand, within GFF2028at 702.132 kb on - strand, within GFF2028at 702.132 kb on - strand, within GFF2028at 702.132 kb on - strand, within GFF2028at 702.132 kb on - strand, within GFF2028at 702.196 kb on - strand, within GFF2028at 702.287 kb on + strand, within GFF2028at 702.287 kb on + strand, within GFF2028at 702.287 kb on + strand, within GFF2028at 702.287 kb on + strand, within GFF2028at 702.288 kb on - strand, within GFF2028at 702.290 kb on + strand, within GFF2028at 702.290 kb on + strand, within GFF2028at 702.291 kb on - strand, within GFF2028at 702.339 kb on - strandat 702.425 kb on + strandat 702.425 kb on + strandat 702.426 kb on - strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.461 kb on - strandat 702.461 kb on - strandat 702.461 kb on - strandat 702.461 kb on - strandat 702.461 kb on - strandat 702.510 kb on - strandat 702.510 kb on - strandat 702.510 kb on - strandat 702.532 kb on + strandat 702.550 kb on + strandat 702.551 kb on - strandat 702.697 kb on + strand, within GFF2029at 702.697 kb on + strand, within GFF2029at 702.697 kb on + strand, within GFF2029at 702.712 kb on + strand, within GFF2029at 702.853 kb on - strand, within GFF2029

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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700,384 + GFF2027 0.30 +1.1
700,442 - GFF2027 0.34 -0.8
700,481 - GFF2027 0.37 -0.1
700,481 - GFF2027 0.37 +0.2
700,481 - GFF2027 0.37 +0.5
700,481 - GFF2027 0.37 -0.6
700,481 - GFF2027 0.37 -0.0
700,801 + GFF2027 0.59 +0.4
700,802 - GFF2027 0.59 +0.2
700,802 - GFF2027 0.59 -0.8
700,904 - GFF2027 0.66 +0.3
700,973 - GFF2027 0.71 -0.8
700,973 - GFF2027 0.71 +0.0
701,017 + GFF2027 0.74 +0.0
701,017 + GFF2027 0.74 -0.1
701,017 + GFF2027 0.74 +0.8
701,018 - GFF2027 0.74 -0.8
701,018 - GFF2027 0.74 +0.1
701,018 - GFF2027 0.74 +0.0
701,110 + GFF2027 0.81 +0.0
701,111 - GFF2027 0.81 -0.0
701,575 - GFF2028 0.19 -0.3
701,777 + GFF2028 0.38 +0.4
701,777 + GFF2028 0.38 +0.3
701,777 + GFF2028 0.38 +0.1
701,777 + GFF2028 0.38 +0.7
701,778 - GFF2028 0.38 -0.5
701,837 + GFF2028 0.44 +0.3
701,838 - GFF2028 0.44 -1.0
701,988 + GFF2028 0.58 -1.6
701,989 - GFF2028 0.58 -0.9
701,989 - GFF2028 0.58 -0.4
701,996 + GFF2028 0.58 -0.9
701,996 + GFF2028 0.58 -0.4
701,996 + GFF2028 0.58 +0.8
701,997 - GFF2028 0.59 +0.0
701,997 - GFF2028 0.59 -0.7
702,131 + GFF2028 0.71 +0.3
702,131 + GFF2028 0.71 -0.1
702,131 + GFF2028 0.71 -0.5
702,131 + GFF2028 0.71 -0.3
702,132 - GFF2028 0.71 -0.3
702,132 - GFF2028 0.71 -0.4
702,132 - GFF2028 0.71 -0.9
702,132 - GFF2028 0.71 +1.2
702,196 - GFF2028 0.77 -0.7
702,287 + GFF2028 0.86 -0.4
702,287 + GFF2028 0.86 -0.1
702,287 + GFF2028 0.86 +0.2
702,287 + GFF2028 0.86 -0.7
702,288 - GFF2028 0.86 +0.1
702,290 + GFF2028 0.86 -2.0
702,290 + GFF2028 0.86 +1.1
702,291 - GFF2028 0.86 -0.7
702,339 - +0.0
702,425 + +0.5
702,425 + +0.3
702,426 - +0.5
702,460 + -0.4
702,460 + -1.1
702,460 + -0.6
702,460 + +0.8
702,460 + -0.9
702,460 + -0.6
702,460 + +0.6
702,461 - +0.0
702,461 - -0.9
702,461 - -0.3
702,461 - +0.2
702,461 - +0.2
702,510 - +0.1
702,510 - +1.3
702,510 - +0.1
702,532 + -0.4
702,550 + +0.4
702,551 - -0.7
702,697 + GFF2029 0.15 +0.6
702,697 + GFF2029 0.15 +1.4
702,697 + GFF2029 0.15 +1.1
702,712 + GFF2029 0.16 -0.5
702,853 - GFF2029 0.25 -0.9

Or see this region's nucleotide sequence