Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2003 and GFF2004 overlap by 13 nucleotides GFF2004 and GFF2005 overlap by 8 nucleotides GFF2005 and GFF2006 are separated by 42 nucleotides GFF2006 and GFF2007 are separated by 39 nucleotides
GFF2003 - 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, at 672,190 to 673,014
GFF2003
GFF2004 - Caffeine dehydrogenase subunit gamma, at 673,002 to 673,520
GFF2004
GFF2005 - 4-chlorobenzoate--CoA ligase, at 673,513 to 675,057
GFF2005
GFF2006 - Carnitinyl-CoA dehydratase, at 675,100 to 675,906
GFF2006
GFF2007 - Proline/betaine transporter, at 675,946 to 677,283
GFF2007
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -1
0
1 at 673.443 kb on + strand, within GFF2004 at 673.444 kb on - strand, within GFF2004 at 673.600 kb on + strand at 673.600 kb on + strand at 673.996 kb on + strand, within GFF2005 at 673.997 kb on - strand, within GFF2005 at 673.997 kb on - strand, within GFF2005 at 674.090 kb on - strand, within GFF2005 at 674.254 kb on + strand, within GFF2005 at 674.254 kb on + strand, within GFF2005 at 674.255 kb on - strand, within GFF2005 at 674.255 kb on - strand, within GFF2005 at 674.435 kb on - strand, within GFF2005 at 674.435 kb on - strand, within GFF2005 at 674.435 kb on - strand, within GFF2005 at 674.435 kb on - strand, within GFF2005 at 674.540 kb on - strand, within GFF2005 at 674.659 kb on + strand, within GFF2005 at 674.659 kb on + strand, within GFF2005 at 674.659 kb on + strand, within GFF2005 at 674.660 kb on - strand, within GFF2005 at 675.019 kb on + strand at 675.020 kb on - strand at 675.067 kb on - strand at 675.463 kb on + strand, within GFF2006 at 675.960 kb on + strand at 675.960 kb on + strand at 675.961 kb on - strand at 675.961 kb on - strand at 675.961 kb on - strand at 675.961 kb on - strand at 675.961 kb on - strand at 675.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 673,443 + GFF2004 0.85 +1.6 673,444 - GFF2004 0.85 -0.3 673,600 + +0.2 673,600 + +0.1 673,996 + GFF2005 0.31 +1.2 673,997 - GFF2005 0.31 +0.2 673,997 - GFF2005 0.31 -1.5 674,090 - GFF2005 0.37 +0.3 674,254 + GFF2005 0.48 -0.5 674,254 + GFF2005 0.48 -0.3 674,255 - GFF2005 0.48 -0.6 674,255 - GFF2005 0.48 -0.1 674,435 - GFF2005 0.60 -0.5 674,435 - GFF2005 0.60 +1.5 674,435 - GFF2005 0.60 +0.6 674,435 - GFF2005 0.60 +0.9 674,540 - GFF2005 0.66 -0.3 674,659 + GFF2005 0.74 +0.5 674,659 + GFF2005 0.74 -0.7 674,659 + GFF2005 0.74 +0.7 674,660 - GFF2005 0.74 -0.1 675,019 + +0.9 675,020 - +0.5 675,067 - +0.3 675,463 + GFF2006 0.45 +0.5 675,960 + -0.4 675,960 + +0.5 675,961 - +0.2 675,961 - -0.2 675,961 - -0.5 675,961 - -0.9 675,961 - -1.5 675,965 - +1.0
Or see this region's nucleotide sequence