Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1995 and GFF1996 are separated by 287 nucleotides GFF1996 and GFF1997 are separated by 35 nucleotides GFF1997 and GFF1998 are separated by 90 nucleotides
GFF1995 - Hydrogen peroxide-inducible genes activator, at 661,965 to 662,954
GFF1995
GFF1996 - putative UbiX-like flavin prenyltransferase, at 663,242 to 663,862
GFF1996
GFF1997 - Phenolic acid decarboxylase, at 663,898 to 665,331
GFF1997
GFF1998 - hypothetical protein, at 665,422 to 666,462
GFF1998
Position (kb) 663
664
665
666 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 662.933 kb on - strand at 663.005 kb on - strand at 663.030 kb on + strand at 663.044 kb on - strand at 663.057 kb on + strand at 663.057 kb on + strand at 663.296 kb on + strand at 663.296 kb on + strand at 663.297 kb on - strand at 663.297 kb on - strand at 663.297 kb on - strand at 663.297 kb on - strand at 663.297 kb on - strand at 663.485 kb on + strand, within GFF1996 at 663.705 kb on - strand, within GFF1996 at 664.260 kb on + strand, within GFF1997 at 664.260 kb on + strand, within GFF1997 at 664.260 kb on + strand, within GFF1997 at 664.260 kb on + strand, within GFF1997 at 664.260 kb on + strand, within GFF1997 at 664.260 kb on + strand, within GFF1997 at 664.261 kb on - strand, within GFF1997 at 664.261 kb on - strand, within GFF1997 at 664.261 kb on - strand, within GFF1997 at 664.324 kb on + strand, within GFF1997 at 664.324 kb on + strand, within GFF1997 at 664.325 kb on - strand, within GFF1997 at 664.325 kb on - strand, within GFF1997 at 664.443 kb on + strand, within GFF1997 at 664.443 kb on + strand, within GFF1997 at 664.444 kb on - strand, within GFF1997 at 664.453 kb on + strand, within GFF1997 at 664.456 kb on + strand, within GFF1997 at 664.456 kb on + strand, within GFF1997 at 664.724 kb on - strand, within GFF1997 at 664.726 kb on + strand, within GFF1997 at 664.726 kb on + strand, within GFF1997 at 664.727 kb on - strand, within GFF1997 at 664.727 kb on - strand, within GFF1997 at 664.792 kb on + strand, within GFF1997 at 664.792 kb on + strand, within GFF1997 at 664.792 kb on + strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 665.070 kb on - strand, within GFF1997 at 665.546 kb on + strand, within GFF1998 at 665.547 kb on - strand, within GFF1998 at 665.547 kb on - strand, within GFF1998 at 665.695 kb on + strand, within GFF1998 at 665.695 kb on + strand, within GFF1998 at 665.695 kb on + strand, within GFF1998 at 665.696 kb on - strand, within GFF1998 at 665.696 kb on - strand, within GFF1998 at 665.761 kb on + strand, within GFF1998 at 665.767 kb on + strand, within GFF1998 at 665.768 kb on - strand, within GFF1998 at 665.917 kb on + strand, within GFF1998 at 665.917 kb on + strand, within GFF1998 at 665.917 kb on + strand, within GFF1998 at 665.918 kb on - strand, within GFF1998 at 665.938 kb on + strand, within GFF1998 at 665.938 kb on + strand, within GFF1998 at 665.938 kb on + strand, within GFF1998 at 666.094 kb on + strand, within GFF1998 at 666.094 kb on + strand, within GFF1998 at 666.094 kb on + strand, within GFF1998 at 666.094 kb on + strand, within GFF1998 at 666.095 kb on - strand, within GFF1998 at 666.095 kb on - strand, within GFF1998 at 666.151 kb on + strand, within GFF1998 at 666.152 kb on - strand, within GFF1998
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 662,933 - -0.2 663,005 - +1.0 663,030 + -0.2 663,044 - +0.5 663,057 + +0.5 663,057 + -0.2 663,296 + +0.6 663,296 + -0.7 663,297 - +0.7 663,297 - +0.2 663,297 - -0.5 663,297 - +1.3 663,297 - +0.9 663,485 + GFF1996 0.39 +0.1 663,705 - GFF1996 0.75 -0.5 664,260 + GFF1997 0.25 +0.1 664,260 + GFF1997 0.25 -0.9 664,260 + GFF1997 0.25 +0.2 664,260 + GFF1997 0.25 -0.1 664,260 + GFF1997 0.25 +0.6 664,260 + GFF1997 0.25 +1.3 664,261 - GFF1997 0.25 +0.5 664,261 - GFF1997 0.25 -0.2 664,261 - GFF1997 0.25 -0.4 664,324 + GFF1997 0.30 -1.7 664,324 + GFF1997 0.30 +0.1 664,325 - GFF1997 0.30 +0.9 664,325 - GFF1997 0.30 -1.3 664,443 + GFF1997 0.38 +0.5 664,443 + GFF1997 0.38 -1.5 664,444 - GFF1997 0.38 -0.2 664,453 + GFF1997 0.39 -1.4 664,456 + GFF1997 0.39 +0.5 664,456 + GFF1997 0.39 +0.0 664,724 - GFF1997 0.58 +0.6 664,726 + GFF1997 0.58 -0.8 664,726 + GFF1997 0.58 +0.5 664,727 - GFF1997 0.58 -0.8 664,727 - GFF1997 0.58 +0.2 664,792 + GFF1997 0.62 +1.0 664,792 + GFF1997 0.62 -0.4 664,792 + GFF1997 0.62 -0.4 664,793 - GFF1997 0.62 +0.2 664,793 - GFF1997 0.62 +0.4 664,793 - GFF1997 0.62 -1.0 664,793 - GFF1997 0.62 -0.6 664,793 - GFF1997 0.62 +0.8 664,793 - GFF1997 0.62 +0.6 664,793 - GFF1997 0.62 -1.0 664,793 - GFF1997 0.62 -0.6 664,793 - GFF1997 0.62 -0.1 665,070 - GFF1997 0.82 -0.6 665,546 + GFF1998 0.12 -0.6 665,547 - GFF1998 0.12 -0.3 665,547 - GFF1998 0.12 -1.0 665,695 + GFF1998 0.26 +0.4 665,695 + GFF1998 0.26 +0.5 665,695 + GFF1998 0.26 +0.9 665,696 - GFF1998 0.26 -0.3 665,696 - GFF1998 0.26 -0.6 665,761 + GFF1998 0.33 -0.8 665,767 + GFF1998 0.33 +0.3 665,768 - GFF1998 0.33 +1.6 665,917 + GFF1998 0.48 -0.1 665,917 + GFF1998 0.48 -0.6 665,917 + GFF1998 0.48 +0.4 665,918 - GFF1998 0.48 -0.8 665,938 + GFF1998 0.50 -0.1 665,938 + GFF1998 0.50 -1.1 665,938 + GFF1998 0.50 -0.7 666,094 + GFF1998 0.65 -0.3 666,094 + GFF1998 0.65 +0.2 666,094 + GFF1998 0.65 +0.4 666,094 + GFF1998 0.65 +1.7 666,095 - GFF1998 0.65 -0.8 666,095 - GFF1998 0.65 +3.8 666,151 + GFF1998 0.70 -0.7 666,152 - GFF1998 0.70 -1.0
Or see this region's nucleotide sequence