Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1982 and GFF1983 are separated by 120 nucleotides GFF1983 and GFF1984 are separated by 103 nucleotides GFF1984 and GFF1985 are separated by 469 nucleotides GFF1985 and GFF1986 overlap by 4 nucleotides
GFF1982 - Inorganic pyrophosphatase, at 647,154 to 647,696
GFF1982
GFF1983 - hypothetical protein, at 647,817 to 648,359
GFF1983
GFF1984 - Protein LacX, plasmid, at 648,463 to 649,347
GFF1984
GFF1985 - Inner membrane protein YjcH, at 649,817 to 650,125
GFF1985
GFF1986 - Cation/acetate symporter ActP, at 650,122 to 651,867
GFF1986
Position (kb) 648
649
650 Strain fitness (log2 ratio) -2
-1
0
1
2 at 647.908 kb on + strand, within GFF1983 at 647.908 kb on + strand, within GFF1983 at 647.909 kb on - strand, within GFF1983 at 647.909 kb on - strand, within GFF1983 at 647.909 kb on - strand, within GFF1983 at 647.909 kb on - strand, within GFF1983 at 648.028 kb on + strand, within GFF1983 at 648.043 kb on + strand, within GFF1983 at 648.097 kb on + strand, within GFF1983 at 648.098 kb on - strand, within GFF1983 at 648.117 kb on - strand, within GFF1983 at 648.326 kb on + strand at 648.454 kb on + strand at 648.454 kb on + strand at 648.585 kb on - strand, within GFF1984 at 648.612 kb on - strand, within GFF1984 at 648.612 kb on - strand, within GFF1984 at 648.695 kb on + strand, within GFF1984 at 648.890 kb on + strand, within GFF1984 at 648.890 kb on + strand, within GFF1984 at 649.000 kb on + strand, within GFF1984 at 649.334 kb on - strand at 649.381 kb on + strand at 649.382 kb on - strand at 649.466 kb on + strand at 649.571 kb on + strand at 649.574 kb on + strand at 649.655 kb on + strand at 649.655 kb on + strand at 649.655 kb on + strand at 649.695 kb on + strand at 649.695 kb on + strand at 649.696 kb on - strand at 649.718 kb on - strand at 649.744 kb on + strand at 649.744 kb on + strand at 649.767 kb on + strand at 649.788 kb on + strand at 649.789 kb on - strand at 649.792 kb on + strand at 649.792 kb on + strand at 649.859 kb on + strand, within GFF1985 at 649.859 kb on + strand, within GFF1985 at 649.860 kb on - strand, within GFF1985 at 649.860 kb on - strand, within GFF1985 at 649.926 kb on - strand, within GFF1985 at 649.928 kb on + strand, within GFF1985 at 649.929 kb on - strand, within GFF1985 at 650.058 kb on - strand, within GFF1985 at 650.058 kb on - strand, within GFF1985 at 650.147 kb on - strand at 650.147 kb on - strand at 650.302 kb on + strand, within GFF1986 at 650.302 kb on + strand, within GFF1986 at 650.303 kb on - strand, within GFF1986
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 647,908 + GFF1983 0.17 +0.6 647,908 + GFF1983 0.17 +0.0 647,909 - GFF1983 0.17 +0.4 647,909 - GFF1983 0.17 +1.0 647,909 - GFF1983 0.17 +0.2 647,909 - GFF1983 0.17 +1.5 648,028 + GFF1983 0.39 -0.4 648,043 + GFF1983 0.42 -0.2 648,097 + GFF1983 0.52 +0.8 648,098 - GFF1983 0.52 -0.8 648,117 - GFF1983 0.55 -0.3 648,326 + +0.2 648,454 + +1.6 648,454 + -0.9 648,585 - GFF1984 0.14 -2.0 648,612 - GFF1984 0.17 -0.4 648,612 - GFF1984 0.17 +1.4 648,695 + GFF1984 0.26 -0.2 648,890 + GFF1984 0.48 -0.1 648,890 + GFF1984 0.48 -0.0 649,000 + GFF1984 0.61 +0.3 649,334 - -0.0 649,381 + -0.5 649,382 - +0.4 649,466 + +0.2 649,571 + +0.4 649,574 + +0.4 649,655 + -1.1 649,655 + -0.1 649,655 + +0.4 649,695 + -0.1 649,695 + +0.2 649,696 - -0.4 649,718 - +0.1 649,744 + -0.1 649,744 + -0.2 649,767 + +1.1 649,788 + -0.2 649,789 - -1.2 649,792 + +0.3 649,792 + -0.1 649,859 + GFF1985 0.14 -0.2 649,859 + GFF1985 0.14 +0.9 649,860 - GFF1985 0.14 -0.9 649,860 - GFF1985 0.14 +0.5 649,926 - GFF1985 0.35 -0.8 649,928 + GFF1985 0.36 +0.8 649,929 - GFF1985 0.36 +0.9 650,058 - GFF1985 0.78 -0.8 650,058 - GFF1985 0.78 +0.8 650,147 - +0.2 650,147 - +0.5 650,302 + GFF1986 0.10 +2.0 650,302 + GFF1986 0.10 -0.4 650,303 - GFF1986 0.10 +0.1
Or see this region's nucleotide sequence