Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF185 and GFF186 are separated by 120 nucleotides GFF186 and GFF187 are separated by 65 nucleotides GFF187 and GFF188 overlap by 4 nucleotides
GFF185 - hypothetical protein, at 194,522 to 195,466
GFF185
GFF186 - hypothetical protein, at 195,587 to 196,750
GFF186
GFF187 - Ureidoglycolate lyase, at 196,816 to 197,289
GFF187
GFF188 - N-carbamoyl-L-amino-acid hydrolase, at 197,286 to 198,536
GFF188
Position (kb) 195
196
197 Strain fitness (log2 ratio) -1
0
1 at 194.870 kb on + strand, within GFF185 at 194.871 kb on - strand, within GFF185 at 195.110 kb on + strand, within GFF185 at 195.110 kb on + strand, within GFF185 at 195.111 kb on - strand, within GFF185 at 195.111 kb on - strand, within GFF185 at 196.113 kb on + strand, within GFF186 at 196.114 kb on - strand, within GFF186 at 196.154 kb on + strand, within GFF186 at 196.154 kb on + strand, within GFF186 at 196.155 kb on - strand, within GFF186 at 196.155 kb on - strand, within GFF186 at 196.163 kb on + strand, within GFF186 at 196.164 kb on - strand, within GFF186 at 196.356 kb on - strand, within GFF186 at 196.356 kb on - strand, within GFF186 at 196.536 kb on - strand, within GFF186 at 196.818 kb on - strand at 197.086 kb on - strand, within GFF187 at 197.240 kb on + strand, within GFF187 at 197.525 kb on + strand, within GFF188 at 197.526 kb on - strand, within GFF188 at 197.575 kb on - strand, within GFF188
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 194,870 + GFF185 0.37 -0.1 194,871 - GFF185 0.37 -0.3 195,110 + GFF185 0.62 -0.1 195,110 + GFF185 0.62 -0.7 195,111 - GFF185 0.62 +0.5 195,111 - GFF185 0.62 -0.3 196,113 + GFF186 0.45 +0.2 196,114 - GFF186 0.45 -0.1 196,154 + GFF186 0.49 -0.4 196,154 + GFF186 0.49 +0.6 196,155 - GFF186 0.49 -0.3 196,155 - GFF186 0.49 -0.2 196,163 + GFF186 0.49 -0.1 196,164 - GFF186 0.50 +0.9 196,356 - GFF186 0.66 -0.2 196,356 - GFF186 0.66 +0.0 196,536 - GFF186 0.82 +0.2 196,818 - +0.3 197,086 - GFF187 0.57 -1.6 197,240 + GFF187 0.89 -0.6 197,525 + GFF188 0.19 +0.3 197,526 - GFF188 0.19 -0.2 197,575 - GFF188 0.23 +0.7
Or see this region's nucleotide sequence