Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1823 and GFF1824 are separated by 5 nucleotides GFF1824 and GFF1825 overlap by 4 nucleotides GFF1825 and GFF1826 are separated by 90 nucleotides
GFF1823 - hypothetical protein, at 480,204 to 480,920
GFF1823
GFF1824 - hypothetical protein, at 480,926 to 481,831
GFF1824
GFF1825 - Sensor histidine kinase RcsC, at 481,828 to 485,451
GFF1825
GFF1826 - hypothetical protein, at 485,542 to 486,474
GFF1826
Position (kb) 481
482
483
484
485
486 Strain fitness (log2 ratio) -2
-1
0
1 at 480.863 kb on + strand at 480.863 kb on + strand at 480.864 kb on - strand at 480.906 kb on + strand at 480.906 kb on + strand at 480.907 kb on - strand at 480.907 kb on - strand at 481.108 kb on - strand, within GFF1824 at 481.227 kb on + strand, within GFF1824 at 481.228 kb on - strand, within GFF1824 at 481.314 kb on + strand, within GFF1824 at 481.315 kb on - strand, within GFF1824 at 481.315 kb on - strand, within GFF1824 at 481.315 kb on - strand, within GFF1824 at 481.419 kb on + strand, within GFF1824 at 481.419 kb on + strand, within GFF1824 at 481.420 kb on - strand, within GFF1824 at 481.470 kb on + strand, within GFF1824 at 482.156 kb on + strand at 482.157 kb on - strand at 482.157 kb on - strand at 482.375 kb on + strand, within GFF1825 at 482.376 kb on - strand, within GFF1825 at 482.625 kb on - strand, within GFF1825 at 482.625 kb on - strand, within GFF1825 at 482.625 kb on - strand, within GFF1825 at 482.846 kb on + strand, within GFF1825 at 482.900 kb on + strand, within GFF1825 at 482.901 kb on - strand, within GFF1825 at 483.442 kb on + strand, within GFF1825 at 483.614 kb on + strand, within GFF1825 at 483.614 kb on + strand, within GFF1825 at 484.439 kb on + strand, within GFF1825 at 484.439 kb on + strand, within GFF1825 at 484.440 kb on - strand, within GFF1825 at 484.440 kb on - strand, within GFF1825 at 484.440 kb on - strand, within GFF1825 at 484.440 kb on - strand, within GFF1825 at 484.440 kb on - strand, within GFF1825 at 485.485 kb on + strand at 485.526 kb on + strand at 485.526 kb on + strand at 485.527 kb on - strand at 485.609 kb on + strand at 485.778 kb on - strand, within GFF1826 at 485.778 kb on - strand, within GFF1826 at 485.778 kb on - strand, within GFF1826 at 485.946 kb on - strand, within GFF1826 at 485.946 kb on - strand, within GFF1826 at 485.946 kb on - strand, within GFF1826 at 485.946 kb on - strand, within GFF1826 at 486.170 kb on + strand, within GFF1826 at 486.171 kb on - strand, within GFF1826 at 486.171 kb on - strand, within GFF1826 at 486.171 kb on - strand, within GFF1826 at 486.182 kb on + strand, within GFF1826 at 486.183 kb on - strand, within GFF1826 at 486.185 kb on + strand, within GFF1826 at 486.185 kb on + strand, within GFF1826 at 486.186 kb on - strand, within GFF1826 at 486.186 kb on - strand, within GFF1826 at 486.265 kb on - strand, within GFF1826 at 486.265 kb on - strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.366 kb on - strand, within GFF1826 at 486.422 kb on + strand at 486.422 kb on + strand at 486.423 kb on - strand at 486.434 kb on + strand at 486.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 480,863 + +1.1 480,863 + +0.4 480,864 - +1.0 480,906 + +1.2 480,906 + +0.2 480,907 - +1.2 480,907 - +0.1 481,108 - GFF1824 0.20 -0.2 481,227 + GFF1824 0.33 -0.7 481,228 - GFF1824 0.33 -1.0 481,314 + GFF1824 0.43 +0.4 481,315 - GFF1824 0.43 +0.8 481,315 - GFF1824 0.43 +1.1 481,315 - GFF1824 0.43 +0.5 481,419 + GFF1824 0.54 -0.5 481,419 + GFF1824 0.54 +1.0 481,420 - GFF1824 0.55 +0.8 481,470 + GFF1824 0.60 -1.1 482,156 + -1.6 482,157 - -1.4 482,157 - +0.7 482,375 + GFF1825 0.15 +0.4 482,376 - GFF1825 0.15 -1.9 482,625 - GFF1825 0.22 -0.1 482,625 - GFF1825 0.22 -0.1 482,625 - GFF1825 0.22 +0.9 482,846 + GFF1825 0.28 -0.7 482,900 + GFF1825 0.30 -1.3 482,901 - GFF1825 0.30 -0.6 483,442 + GFF1825 0.45 -0.4 483,614 + GFF1825 0.49 -0.6 483,614 + GFF1825 0.49 +1.7 484,439 + GFF1825 0.72 +0.2 484,439 + GFF1825 0.72 -0.0 484,440 - GFF1825 0.72 +0.2 484,440 - GFF1825 0.72 +0.6 484,440 - GFF1825 0.72 -0.5 484,440 - GFF1825 0.72 -0.1 484,440 - GFF1825 0.72 +0.6 485,485 + -0.0 485,526 + -0.0 485,526 + -0.2 485,527 - -0.8 485,609 + +0.1 485,778 - GFF1826 0.25 +0.7 485,778 - GFF1826 0.25 -0.9 485,778 - GFF1826 0.25 -2.0 485,946 - GFF1826 0.43 +1.1 485,946 - GFF1826 0.43 -0.0 485,946 - GFF1826 0.43 +0.8 485,946 - GFF1826 0.43 -1.3 486,170 + GFF1826 0.67 +0.6 486,171 - GFF1826 0.67 -0.6 486,171 - GFF1826 0.67 +0.8 486,171 - GFF1826 0.67 -0.1 486,182 + GFF1826 0.69 -0.3 486,183 - GFF1826 0.69 -0.2 486,185 + GFF1826 0.69 -0.7 486,185 + GFF1826 0.69 +0.4 486,186 - GFF1826 0.69 -0.8 486,186 - GFF1826 0.69 +0.5 486,265 - GFF1826 0.77 -1.2 486,265 - GFF1826 0.77 +0.7 486,365 + GFF1826 0.88 +0.4 486,365 + GFF1826 0.88 +1.0 486,365 + GFF1826 0.88 +0.3 486,365 + GFF1826 0.88 -0.2 486,366 - GFF1826 0.88 -1.7 486,422 + +0.2 486,422 + -0.6 486,423 - -0.1 486,434 + +0.2 486,435 - -0.8
Or see this region's nucleotide sequence