Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1789 and GFF1790 are separated by 183 nucleotides GFF1790 and GFF1791 are separated by 80 nucleotides GFF1791 and GFF1792 are separated by 113 nucleotides
GFF1789 - Acyl-CoA dehydrogenase, at 438,291 to 439,460
GFF1789
GFF1790 - putative 3-hydroxyisobutyrate dehydrogenase, at 439,644 to 440,543
GFF1790
GFF1791 - Inner membrane protein YhaH, at 440,624 to 441,058
GFF1791
GFF1792 - Putative aminoacrylate hydrolase RutD, at 441,172 to 442,137
GFF1792
Position (kb) 439
440
441 Strain fitness (log2 ratio) -2
-1
0
1 at 438.678 kb on + strand, within GFF1789 at 438.679 kb on - strand, within GFF1789 at 438.753 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 439.098 kb on + strand, within GFF1789 at 439.099 kb on - strand, within GFF1789 at 439.099 kb on - strand, within GFF1789 at 439.099 kb on - strand, within GFF1789 at 439.351 kb on - strand at 439.601 kb on + strand at 439.601 kb on + strand at 439.601 kb on + strand at 439.605 kb on + strand at 439.605 kb on + strand at 439.605 kb on + strand at 439.605 kb on + strand at 439.605 kb on + strand at 439.605 kb on + strand at 439.605 kb on + strand at 439.606 kb on - strand at 439.606 kb on - strand at 439.606 kb on - strand at 439.606 kb on - strand at 439.606 kb on - strand at 440.298 kb on + strand, within GFF1790 at 440.298 kb on + strand, within GFF1790 at 440.298 kb on + strand, within GFF1790 at 440.298 kb on + strand, within GFF1790 at 440.299 kb on - strand, within GFF1790 at 440.299 kb on - strand, within GFF1790 at 440.299 kb on - strand, within GFF1790 at 440.299 kb on - strand, within GFF1790 at 440.299 kb on - strand, within GFF1790 at 440.299 kb on - strand, within GFF1790 at 440.299 kb on - strand, within GFF1790 at 440.346 kb on + strand, within GFF1790 at 440.346 kb on + strand, within GFF1790 at 440.347 kb on - strand, within GFF1790 at 440.378 kb on + strand, within GFF1790 at 440.458 kb on - strand at 440.458 kb on - strand at 440.664 kb on + strand at 440.862 kb on + strand, within GFF1791 at 441.018 kb on + strand at 441.018 kb on + strand at 441.019 kb on - strand at 441.104 kb on + strand at 441.104 kb on + strand at 441.105 kb on - strand at 441.320 kb on - strand, within GFF1792
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 438,678 + GFF1789 0.33 -0.6 438,679 - GFF1789 0.33 -1.4 438,753 + GFF1789 0.39 -0.2 438,807 + GFF1789 0.44 -1.1 438,807 + GFF1789 0.44 +1.0 438,807 + GFF1789 0.44 -0.5 438,807 + GFF1789 0.44 -1.7 438,807 + GFF1789 0.44 +0.3 438,808 - GFF1789 0.44 -0.6 438,808 - GFF1789 0.44 -0.6 438,808 - GFF1789 0.44 -1.3 438,808 - GFF1789 0.44 -0.8 438,808 - GFF1789 0.44 +0.2 438,808 - GFF1789 0.44 -0.6 439,098 + GFF1789 0.69 +0.5 439,099 - GFF1789 0.69 -0.5 439,099 - GFF1789 0.69 +0.2 439,099 - GFF1789 0.69 +1.7 439,351 - -0.1 439,601 + +0.2 439,601 + -1.6 439,601 + -0.2 439,605 + +0.8 439,605 + -1.1 439,605 + -0.9 439,605 + -1.3 439,605 + +0.5 439,605 + -0.1 439,605 + -0.2 439,606 - +0.7 439,606 - -0.5 439,606 - -1.5 439,606 - +0.0 439,606 - +0.7 440,298 + GFF1790 0.73 +0.7 440,298 + GFF1790 0.73 -0.2 440,298 + GFF1790 0.73 +0.3 440,298 + GFF1790 0.73 -0.2 440,299 - GFF1790 0.73 +0.9 440,299 - GFF1790 0.73 +0.8 440,299 - GFF1790 0.73 +0.6 440,299 - GFF1790 0.73 -0.3 440,299 - GFF1790 0.73 +0.1 440,299 - GFF1790 0.73 -1.1 440,299 - GFF1790 0.73 +0.2 440,346 + GFF1790 0.78 -0.5 440,346 + GFF1790 0.78 -0.5 440,347 - GFF1790 0.78 -1.6 440,378 + GFF1790 0.82 -1.7 440,458 - +0.1 440,458 - -0.0 440,664 + +0.3 440,862 + GFF1791 0.55 -0.1 441,018 + +0.1 441,018 + -0.1 441,019 - -0.1 441,104 + -0.7 441,104 + -1.9 441,105 - +0.5 441,320 - GFF1792 0.15 +0.9
Or see this region's nucleotide sequence