Strain Fitness in Xanthobacter sp. DMC5 around GFF1698

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1696 and GFF1697 are separated by 27 nucleotidesGFF1697 and GFF1698 are separated by 7 nucleotidesGFF1698 and GFF1699 overlap by 4 nucleotides GFF1696 - 1-deoxy-11-beta-hydroxypentalenate dehydrogenase, at 346,135 to 346,986 GFF1696 GFF1697 - Aromatic amino acid exporter YddG, at 347,014 to 347,868 GFF1697 GFF1698 - CTP pyrophosphohydrolase, at 347,876 to 348,280 GFF1698 GFF1699 - Arginine biosynthesis bifunctional protein ArgJ, at 348,277 to 349,518 GFF1699 Position (kb) 347 348 349Strain fitness (log2 ratio) -1 0 1at 347.136 kb on - strand, within GFF1697at 347.136 kb on - strand, within GFF1697at 347.192 kb on + strand, within GFF1697at 347.193 kb on - strand, within GFF1697at 347.193 kb on - strand, within GFF1697at 347.374 kb on - strand, within GFF1697at 347.415 kb on - strand, within GFF1697at 347.415 kb on - strand, within GFF1697at 347.577 kb on - strand, within GFF1697at 347.577 kb on - strand, within GFF1697at 347.670 kb on - strand, within GFF1697at 348.051 kb on + strand, within GFF1698

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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347,136 - GFF1697 0.14 +0.2
347,136 - GFF1697 0.14 -1.1
347,192 + GFF1697 0.21 -0.8
347,193 - GFF1697 0.21 +0.5
347,193 - GFF1697 0.21 +1.7
347,374 - GFF1697 0.42 -0.4
347,415 - GFF1697 0.47 -0.5
347,415 - GFF1697 0.47 -0.7
347,577 - GFF1697 0.66 -0.6
347,577 - GFF1697 0.66 +0.2
347,670 - GFF1697 0.77 -0.6
348,051 + GFF1698 0.43 -0.2

Or see this region's nucleotide sequence