Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1683 and GFF1684 overlap by 4 nucleotides GFF1684 and GFF1685 are separated by 6 nucleotides GFF1685 and GFF1686 are separated by 139 nucleotides GFF1686 and GFF1687 are separated by 178 nucleotides GFF1687 and GFF1688 are separated by 91 nucleotides
GFF1683 - hypothetical protein, at 335,241 to 335,705
GFF1683
GFF1684 - hypothetical protein, at 335,702 to 336,187
GFF1684
GFF1685 - ABC transporter ATP-binding protein uup, at 336,194 to 338,023
GFF1685
GFF1686 - hypothetical protein, at 338,163 to 338,342
GFF1686
GFF1687 - hypothetical protein, at 338,521 to 338,727
GFF1687
GFF1688 - Peroxiredoxin, at 338,819 to 339,304
GFF1688
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -2
-1
0
1 at 335.708 kb on + strand at 335.708 kb on + strand at 335.708 kb on + strand at 335.708 kb on + strand at 335.709 kb on - strand at 335.709 kb on - strand at 335.709 kb on - strand at 335.709 kb on - strand at 336.023 kb on + strand, within GFF1684 at 336.024 kb on - strand, within GFF1684 at 336.039 kb on + strand, within GFF1684 at 336.040 kb on - strand, within GFF1684 at 336.040 kb on - strand, within GFF1684 at 336.041 kb on - strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.318 kb on + strand at 336.318 kb on + strand at 336.319 kb on - strand at 336.319 kb on - strand at 336.319 kb on - strand at 336.576 kb on + strand, within GFF1685 at 336.576 kb on + strand, within GFF1685 at 336.865 kb on - strand, within GFF1685 at 337.391 kb on + strand, within GFF1685 at 337.713 kb on + strand, within GFF1685 at 337.713 kb on + strand, within GFF1685 at 337.714 kb on - strand, within GFF1685 at 337.726 kb on - strand, within GFF1685 at 337.726 kb on - strand, within GFF1685 at 337.761 kb on + strand, within GFF1685 at 337.762 kb on - strand, within GFF1685 at 337.762 kb on - strand, within GFF1685 at 337.762 kb on - strand, within GFF1685 at 337.762 kb on - strand, within GFF1685 at 337.810 kb on - strand, within GFF1685 at 338.264 kb on + strand, within GFF1686 at 338.347 kb on - strand at 338.347 kb on - strand at 338.461 kb on + strand at 338.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 335,708 + +0.7 335,708 + -0.1 335,708 + +0.3 335,708 + -1.3 335,709 - -1.1 335,709 - -0.8 335,709 - -0.1 335,709 - +0.4 336,023 + GFF1684 0.66 -0.2 336,024 - GFF1684 0.66 -0.5 336,039 + GFF1684 0.69 -1.9 336,040 - GFF1684 0.70 +0.2 336,040 - GFF1684 0.70 +0.2 336,041 - GFF1684 0.70 -0.1 336,110 + GFF1684 0.84 -1.1 336,110 + GFF1684 0.84 -1.6 336,110 + GFF1684 0.84 +0.7 336,110 + GFF1684 0.84 +0.8 336,110 + GFF1684 0.84 +0.1 336,318 + +0.9 336,318 + +0.7 336,319 - +0.2 336,319 - -0.3 336,319 - +0.6 336,576 + GFF1685 0.21 -0.2 336,576 + GFF1685 0.21 -0.6 336,865 - GFF1685 0.37 -0.0 337,391 + GFF1685 0.65 +1.6 337,713 + GFF1685 0.83 -1.0 337,713 + GFF1685 0.83 -0.1 337,714 - GFF1685 0.83 +1.0 337,726 - GFF1685 0.84 -0.2 337,726 - GFF1685 0.84 +0.3 337,761 + GFF1685 0.86 -0.0 337,762 - GFF1685 0.86 -0.3 337,762 - GFF1685 0.86 +0.1 337,762 - GFF1685 0.86 -0.0 337,762 - GFF1685 0.86 +0.1 337,810 - GFF1685 0.88 -0.1 338,264 + GFF1686 0.56 +0.2 338,347 - -0.5 338,347 - +0.1 338,461 + +0.4 338,758 + -0.2
Or see this region's nucleotide sequence