Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF165 and GFF166 overlap by 4 nucleotides GFF166 and GFF167 are separated by 85 nucleotides GFF167 and GFF168 are separated by 10 nucleotides GFF168 and GFF169 are separated by 342 nucleotides
GFF165 - hypothetical protein, at 174,501 to 174,746
GFF165
GFF166 - Histidinol-phosphatase, at 174,743 to 175,594
GFF166
GFF167 - 4-hydroxybenzoate octaprenyltransferase, at 175,680 to 176,645
GFF167
GFF168 - hypothetical protein, at 176,656 to 177,138
GFF168
GFF169 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 177,481 to 178,266
GFF169
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1 at 174.862 kb on - strand, within GFF166 at 175.481 kb on - strand, within GFF166 at 175.608 kb on - strand at 175.634 kb on + strand at 175.634 kb on + strand at 177.187 kb on - strand at 177.189 kb on - strand at 177.189 kb on - strand at 177.189 kb on - strand at 177.189 kb on - strand at 177.212 kb on - strand at 177.212 kb on - strand at 177.212 kb on - strand at 177.506 kb on - strand at 177.586 kb on - strand, within GFF169 at 177.588 kb on - strand, within GFF169
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 174,862 - GFF166 0.14 -0.8 175,481 - GFF166 0.87 -0.0 175,608 - +0.3 175,634 + -1.2 175,634 + -0.1 177,187 - +0.4 177,189 - +1.0 177,189 - -1.8 177,189 - -0.0 177,189 - +0.2 177,212 - -0.5 177,212 - -0.2 177,212 - +0.9 177,506 - -0.5 177,586 - GFF169 0.13 -0.8 177,588 - GFF169 0.14 +0.9
Or see this region's nucleotide sequence