Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1610 and GFF1611 are separated by 44 nucleotides GFF1611 and GFF1612 are separated by 258 nucleotides
GFF1610 - 2-hydroxy-3-oxopropionate reductase, at 260,980 to 261,927
GFF1610
GFF1611 - hypothetical protein, at 261,972 to 262,796
GFF1611
GFF1612 - hypothetical protein, at 263,055 to 263,720
GFF1612
Position (kb) 261
262
263 Strain fitness (log2 ratio) -1
0
1
2 at 261.104 kb on + strand, within GFF1610 at 261.104 kb on + strand, within GFF1610 at 261.104 kb on + strand, within GFF1610 at 261.105 kb on - strand, within GFF1610 at 261.105 kb on - strand, within GFF1610 at 261.105 kb on - strand, within GFF1610 at 261.105 kb on - strand, within GFF1610 at 261.135 kb on + strand, within GFF1610 at 261.568 kb on + strand, within GFF1610 at 261.568 kb on + strand, within GFF1610 at 261.569 kb on - strand, within GFF1610 at 261.569 kb on - strand, within GFF1610 at 261.652 kb on + strand, within GFF1610 at 261.682 kb on + strand, within GFF1610 at 261.682 kb on + strand, within GFF1610 at 261.683 kb on - strand, within GFF1610 at 261.683 kb on - strand, within GFF1610 at 261.725 kb on - strand, within GFF1610 at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.850 kb on - strand at 261.850 kb on - strand at 261.850 kb on - strand at 261.850 kb on - strand at 261.880 kb on + strand at 261.880 kb on + strand at 261.881 kb on - strand at 261.982 kb on - strand at 262.039 kb on + strand at 262.105 kb on - strand, within GFF1611 at 262.180 kb on + strand, within GFF1611 at 262.213 kb on + strand, within GFF1611 at 262.214 kb on - strand, within GFF1611 at 262.333 kb on + strand, within GFF1611 at 262.334 kb on - strand, within GFF1611 at 262.385 kb on + strand, within GFF1611 at 262.385 kb on + strand, within GFF1611 at 262.385 kb on + strand, within GFF1611 at 262.385 kb on + strand, within GFF1611 at 262.386 kb on - strand, within GFF1611 at 262.386 kb on - strand, within GFF1611 at 262.386 kb on - strand, within GFF1611 at 262.386 kb on - strand, within GFF1611 at 262.486 kb on + strand, within GFF1611 at 262.486 kb on + strand, within GFF1611 at 262.486 kb on + strand, within GFF1611 at 262.486 kb on + strand, within GFF1611 at 262.487 kb on - strand, within GFF1611 at 262.487 kb on - strand, within GFF1611 at 262.487 kb on - strand, within GFF1611 at 262.487 kb on - strand, within GFF1611 at 262.487 kb on - strand, within GFF1611 at 262.511 kb on + strand, within GFF1611 at 262.660 kb on + strand, within GFF1611 at 262.660 kb on + strand, within GFF1611 at 262.661 kb on - strand, within GFF1611 at 262.661 kb on - strand, within GFF1611 at 262.810 kb on + strand at 262.810 kb on + strand at 262.810 kb on + strand at 262.810 kb on + strand at 262.811 kb on - strand at 262.811 kb on - strand at 262.811 kb on - strand at 262.815 kb on - strand at 262.815 kb on - strand at 262.815 kb on - strand at 262.855 kb on + strand at 262.867 kb on - strand at 262.900 kb on - strand at 262.900 kb on - strand at 262.900 kb on - strand at 262.914 kb on - strand at 262.914 kb on - strand at 262.923 kb on + strand at 262.923 kb on + strand at 262.923 kb on + strand at 262.924 kb on - strand at 263.010 kb on + strand at 263.011 kb on - strand at 263.011 kb on - strand at 263.014 kb on + strand at 263.071 kb on + strand at 263.071 kb on + strand at 263.448 kb on + strand, within GFF1612 at 263.449 kb on - strand, within GFF1612 at 263.449 kb on - strand, within GFF1612 at 263.449 kb on - strand, within GFF1612 at 263.527 kb on - strand, within GFF1612 at 263.609 kb on - strand, within GFF1612 at 263.609 kb on - strand, within GFF1612 at 263.609 kb on - strand, within GFF1612 at 263.693 kb on - strand at 263.707 kb on + strand at 263.732 kb on - strand at 263.732 kb on - strand at 263.763 kb on - strand at 263.763 kb on - strand at 263.765 kb on - strand at 263.765 kb on - strand at 263.765 kb on - strand at 263.765 kb on - strand at 263.765 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 261,104 + GFF1610 0.13 +0.1 261,104 + GFF1610 0.13 +2.0 261,104 + GFF1610 0.13 +0.3 261,105 - GFF1610 0.13 -0.2 261,105 - GFF1610 0.13 +0.0 261,105 - GFF1610 0.13 +0.3 261,105 - GFF1610 0.13 +0.6 261,135 + GFF1610 0.16 +0.3 261,568 + GFF1610 0.62 +0.5 261,568 + GFF1610 0.62 -0.4 261,569 - GFF1610 0.62 +1.0 261,569 - GFF1610 0.62 -1.2 261,652 + GFF1610 0.71 -0.7 261,682 + GFF1610 0.74 -0.5 261,682 + GFF1610 0.74 +0.5 261,683 - GFF1610 0.74 -1.5 261,683 - GFF1610 0.74 +0.4 261,725 - GFF1610 0.79 -0.4 261,849 + -1.0 261,849 + -1.3 261,849 + +0.7 261,849 + +0.8 261,849 + +1.3 261,849 + -0.4 261,849 + +1.1 261,849 + +0.2 261,850 - -0.6 261,850 - -1.0 261,850 - -0.7 261,850 - -0.5 261,880 + +1.1 261,880 + +0.2 261,881 - -0.3 261,982 - +0.2 262,039 + +1.3 262,105 - GFF1611 0.16 +0.3 262,180 + GFF1611 0.25 +0.4 262,213 + GFF1611 0.29 -0.5 262,214 - GFF1611 0.29 -0.6 262,333 + GFF1611 0.44 -0.3 262,334 - GFF1611 0.44 -1.4 262,385 + GFF1611 0.50 +0.5 262,385 + GFF1611 0.50 +0.5 262,385 + GFF1611 0.50 -1.1 262,385 + GFF1611 0.50 +0.3 262,386 - GFF1611 0.50 -1.6 262,386 - GFF1611 0.50 -0.0 262,386 - GFF1611 0.50 -0.9 262,386 - GFF1611 0.50 -0.8 262,486 + GFF1611 0.62 -0.0 262,486 + GFF1611 0.62 -0.4 262,486 + GFF1611 0.62 -0.4 262,486 + GFF1611 0.62 -1.1 262,487 - GFF1611 0.62 -0.3 262,487 - GFF1611 0.62 +0.2 262,487 - GFF1611 0.62 -0.5 262,487 - GFF1611 0.62 -1.6 262,487 - GFF1611 0.62 +2.3 262,511 + GFF1611 0.65 +0.5 262,660 + GFF1611 0.83 -0.3 262,660 + GFF1611 0.83 +0.5 262,661 - GFF1611 0.84 +0.6 262,661 - GFF1611 0.84 +0.3 262,810 + -1.6 262,810 + +0.4 262,810 + +0.1 262,810 + -0.4 262,811 - +0.3 262,811 - +0.2 262,811 - +0.5 262,815 - +0.4 262,815 - -0.7 262,815 - -1.0 262,855 + -1.1 262,867 - +0.4 262,900 - -0.0 262,900 - -1.3 262,900 - +0.4 262,914 - +0.8 262,914 - -0.2 262,923 + +0.1 262,923 + -0.0 262,923 + +1.0 262,924 - -0.3 263,010 + -0.3 263,011 - +0.2 263,011 - +0.4 263,014 + +0.1 263,071 + -0.1 263,071 + -0.6 263,448 + GFF1612 0.59 -0.5 263,449 - GFF1612 0.59 +1.6 263,449 - GFF1612 0.59 -1.7 263,449 - GFF1612 0.59 +0.1 263,527 - GFF1612 0.71 +0.2 263,609 - GFF1612 0.83 -0.7 263,609 - GFF1612 0.83 +0.0 263,609 - GFF1612 0.83 -0.2 263,693 - -1.4 263,707 + -0.3 263,732 - +0.1 263,732 - +0.1 263,763 - -0.6 263,763 - -1.0 263,765 - -0.7 263,765 - +0.1 263,765 - -1.5 263,765 - +0.2 263,765 - -0.5
Or see this region's nucleotide sequence