Strain Fitness in Xanthobacter sp. DMC5 around GFF1598

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1597 and GFF1598 are separated by 17 nucleotidesGFF1598 and GFF1599 are separated by 188 nucleotidesGFF1599 and GFF1600 overlap by 8 nucleotides GFF1597 - Muconate cycloisomerase 1, at 247,263 to 248,414 GFF1597 GFF1598 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, at 248,432 to 249,307 GFF1598 GFF1599 - hypothetical protein, at 249,496 to 249,891 GFF1599 GFF1600 - 2-(hydroxymethyl)glutarate dehydrogenase, at 249,884 to 250,780 GFF1600 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 247.529 kb on + strand, within GFF1597at 247.529 kb on + strand, within GFF1597at 247.530 kb on - strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.850 kb on + strand, within GFF1597at 247.887 kb on - strand, within GFF1597at 247.892 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.966 kb on - strand, within GFF1597at 247.966 kb on - strand, within GFF1597at 248.166 kb on + strand, within GFF1597at 248.167 kb on - strand, within GFF1597at 248.167 kb on - strand, within GFF1597at 248.214 kb on - strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.529 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.703 kb on + strand, within GFF1598at 248.704 kb on - strand, within GFF1598at 248.704 kb on - strand, within GFF1598at 248.753 kb on + strand, within GFF1598at 248.754 kb on - strand, within GFF1598at 248.754 kb on - strand, within GFF1598at 248.809 kb on + strand, within GFF1598at 248.810 kb on - strand, within GFF1598at 248.844 kb on + strand, within GFF1598at 248.845 kb on - strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.964 kb on - strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.038 kb on - strand, within GFF1598at 249.105 kb on + strand, within GFF1598at 249.270 kb on + strandat 249.270 kb on + strandat 249.409 kb on - strandat 249.438 kb on - strandat 249.438 kb on - strandat 249.462 kb on - strandat 249.474 kb on + strandat 249.475 kb on - strandat 249.475 kb on - strandat 249.495 kb on + strandat 249.496 kb on - strandat 249.496 kb on - strandat 249.496 kb on - strandat 249.571 kb on + strand, within GFF1599at 249.571 kb on + strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.797 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.974 kb on + strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
247,529 + GFF1597 0.23 -1.4
247,529 + GFF1597 0.23 -1.9
247,530 - GFF1597 0.23 +0.7
247,776 + GFF1597 0.45 +0.5
247,776 + GFF1597 0.45 -0.6
247,776 + GFF1597 0.45 -0.1
247,776 + GFF1597 0.45 +0.8
247,776 + GFF1597 0.45 -1.6
247,777 - GFF1597 0.45 +0.1
247,777 - GFF1597 0.45 -0.1
247,777 - GFF1597 0.45 +0.0
247,777 - GFF1597 0.45 +0.3
247,777 - GFF1597 0.45 +0.0
247,850 + GFF1597 0.51 +0.3
247,887 - GFF1597 0.54 +0.5
247,892 + GFF1597 0.55 -0.6
247,965 + GFF1597 0.61 +0.1
247,965 + GFF1597 0.61 +0.6
247,965 + GFF1597 0.61 -0.6
247,966 - GFF1597 0.61 -0.1
247,966 - GFF1597 0.61 +1.0
248,166 + GFF1597 0.78 -0.7
248,167 - GFF1597 0.78 +0.3
248,167 - GFF1597 0.78 +0.1
248,214 - GFF1597 0.83 +0.4
248,278 + GFF1597 0.88 -0.2
248,278 + GFF1597 0.88 +0.3
248,278 + GFF1597 0.88 +0.6
248,279 - GFF1597 0.88 -2.6
248,279 - GFF1597 0.88 -0.2
248,279 - GFF1597 0.88 -0.4
248,279 - GFF1597 0.88 -0.8
248,529 + GFF1598 0.11 +0.2
248,637 + GFF1598 0.23 -1.0
248,637 + GFF1598 0.23 -2.0
248,637 + GFF1598 0.23 -0.4
248,637 + GFF1598 0.23 +0.1
248,637 + GFF1598 0.23 -0.2
248,637 + GFF1598 0.23 -0.9
248,638 - GFF1598 0.24 +0.0
248,638 - GFF1598 0.24 +0.9
248,638 - GFF1598 0.24 +0.7
248,703 + GFF1598 0.31 -0.2
248,704 - GFF1598 0.31 -0.2
248,704 - GFF1598 0.31 +0.3
248,753 + GFF1598 0.37 -0.2
248,754 - GFF1598 0.37 -0.4
248,754 - GFF1598 0.37 -0.2
248,809 + GFF1598 0.43 +0.4
248,810 - GFF1598 0.43 -0.3
248,844 + GFF1598 0.47 +1.0
248,845 - GFF1598 0.47 +0.0
248,963 + GFF1598 0.61 -0.1
248,963 + GFF1598 0.61 +0.0
248,964 - GFF1598 0.61 +0.7
249,037 + GFF1598 0.69 -0.4
249,037 + GFF1598 0.69 -0.3
249,038 - GFF1598 0.69 +1.0
249,105 + GFF1598 0.77 +0.0
249,270 + +0.9
249,270 + +0.2
249,409 - -0.3
249,438 - -0.2
249,438 - -1.7
249,462 - -0.3
249,474 + +1.2
249,475 - -0.3
249,475 - -0.7
249,495 + -0.3
249,496 - +0.6
249,496 - -0.2
249,496 - +0.5
249,571 + GFF1599 0.19 +0.8
249,571 + GFF1599 0.19 +0.8
249,572 - GFF1599 0.19 -0.5
249,572 - GFF1599 0.19 +0.0
249,572 - GFF1599 0.19 +0.4
249,572 - GFF1599 0.19 +0.2
249,797 + GFF1599 0.76 +0.3
249,817 + GFF1599 0.81 -1.7
249,817 + GFF1599 0.81 -0.2
249,817 + GFF1599 0.81 -0.3
249,817 + GFF1599 0.81 +0.7
249,818 - GFF1599 0.81 +1.2
249,818 - GFF1599 0.81 -0.8
249,818 - GFF1599 0.81 +0.5
249,818 - GFF1599 0.81 -1.6
249,818 - GFF1599 0.81 +0.6
249,818 - GFF1599 0.81 -1.4
249,818 - GFF1599 0.81 -0.1
249,818 - GFF1599 0.81 -0.4
249,974 + GFF1600 0.10 -1.0
249,975 - GFF1600 0.10 -0.4
249,975 - GFF1600 0.10 +2.2
250,241 - GFF1600 0.40 +1.0
250,241 - GFF1600 0.40 +0.2
250,241 - GFF1600 0.40 +1.6
250,241 - GFF1600 0.40 +0.3
250,241 - GFF1600 0.40 -0.7
250,241 - GFF1600 0.40 +0.4

Or see this region's nucleotide sequence