Strain Fitness in Xanthobacter sp. DMC5 around GFF1595

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1593 and GFF1594 are separated by 349 nucleotidesGFF1594 and GFF1595 are separated by 1 nucleotidesGFF1595 and GFF1596 are separated by 19 nucleotides GFF1593 - Prophage integrase IntA, at 241,561 to 242,796 GFF1593 GFF1594 - hypothetical protein, at 243,146 to 243,529 GFF1594 GFF1595 - hypothetical protein, at 243,531 to 245,336 GFF1595 GFF1596 - hypothetical protein, at 245,356 to 246,486 GFF1596 Position (kb) 243 244 245 246Strain fitness (log2 ratio) -1 0 1 2at 242.791 kb on - strandat 242.791 kb on - strandat 242.794 kb on + strandat 242.841 kb on - strandat 242.870 kb on - strandat 242.876 kb on - strandat 242.901 kb on - strandat 242.963 kb on + strandat 242.963 kb on + strandat 242.963 kb on + strandat 242.964 kb on - strandat 242.964 kb on - strandat 242.964 kb on - strandat 242.964 kb on - strandat 243.076 kb on + strandat 243.335 kb on + strand, within GFF1594at 243.335 kb on + strand, within GFF1594at 243.442 kb on + strand, within GFF1594at 243.442 kb on + strand, within GFF1594at 243.442 kb on + strand, within GFF1594at 243.442 kb on + strand, within GFF1594at 243.442 kb on + strand, within GFF1594at 243.442 kb on + strand, within GFF1594at 243.443 kb on - strand, within GFF1594at 243.461 kb on - strand, within GFF1594at 243.468 kb on - strand, within GFF1594at 243.519 kb on + strandat 243.531 kb on - strandat 243.531 kb on - strandat 243.841 kb on - strand, within GFF1595at 243.841 kb on - strand, within GFF1595at 243.841 kb on - strand, within GFF1595at 244.033 kb on - strand, within GFF1595at 244.033 kb on - strand, within GFF1595at 244.035 kb on + strand, within GFF1595at 244.035 kb on + strand, within GFF1595at 244.035 kb on + strand, within GFF1595at 244.035 kb on + strand, within GFF1595at 244.035 kb on + strand, within GFF1595at 244.035 kb on + strand, within GFF1595at 244.036 kb on - strand, within GFF1595at 244.036 kb on - strand, within GFF1595at 244.036 kb on - strand, within GFF1595at 244.036 kb on - strand, within GFF1595at 244.036 kb on - strand, within GFF1595at 244.036 kb on - strand, within GFF1595at 244.071 kb on + strand, within GFF1595at 244.072 kb on - strand, within GFF1595at 244.072 kb on - strand, within GFF1595at 244.072 kb on - strand, within GFF1595at 244.072 kb on - strand, within GFF1595at 244.108 kb on - strand, within GFF1595at 244.224 kb on + strand, within GFF1595at 244.224 kb on + strand, within GFF1595at 244.378 kb on - strand, within GFF1595at 244.707 kb on + strand, within GFF1595at 244.707 kb on + strand, within GFF1595at 244.708 kb on - strand, within GFF1595at 244.708 kb on - strand, within GFF1595at 244.962 kb on + strand, within GFF1595at 244.962 kb on + strand, within GFF1595at 244.962 kb on + strand, within GFF1595at 244.962 kb on + strand, within GFF1595at 244.962 kb on + strand, within GFF1595at 244.962 kb on + strand, within GFF1595at 244.971 kb on + strand, within GFF1595at 245.150 kb on + strand, within GFF1595at 245.151 kb on - strand, within GFF1595at 245.151 kb on - strand, within GFF1595at 245.326 kb on - strandat 245.326 kb on - strandat 245.362 kb on - strandat 245.362 kb on - strandat 245.362 kb on - strandat 245.461 kb on + strandat 245.461 kb on + strandat 245.461 kb on + strandat 245.611 kb on + strand, within GFF1596at 245.611 kb on + strand, within GFF1596at 245.844 kb on - strand, within GFF1596at 245.985 kb on + strand, within GFF1596at 245.986 kb on - strand, within GFF1596at 245.986 kb on - strand, within GFF1596at 245.992 kb on - strand, within GFF1596at 245.992 kb on - strand, within GFF1596at 246.070 kb on + strand, within GFF1596at 246.126 kb on + strand, within GFF1596at 246.166 kb on - strand, within GFF1596at 246.166 kb on - strand, within GFF1596at 246.166 kb on - strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.298 kb on + strand, within GFF1596at 246.299 kb on - strand, within GFF1596at 246.299 kb on - strand, within GFF1596

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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242,791 - +1.5
242,791 - -0.4
242,794 + -0.6
242,841 - -0.4
242,870 - +0.5
242,876 - +0.3
242,901 - +1.6
242,963 + +0.2
242,963 + -0.5
242,963 + -0.2
242,964 - -0.5
242,964 - -0.8
242,964 - -1.1
242,964 - -0.3
243,076 + +0.6
243,335 + GFF1594 0.49 -0.3
243,335 + GFF1594 0.49 +1.6
243,442 + GFF1594 0.77 +0.1
243,442 + GFF1594 0.77 +0.7
243,442 + GFF1594 0.77 +0.8
243,442 + GFF1594 0.77 +0.8
243,442 + GFF1594 0.77 +1.1
243,442 + GFF1594 0.77 -0.1
243,443 - GFF1594 0.77 +0.5
243,461 - GFF1594 0.82 -0.1
243,468 - GFF1594 0.84 -0.9
243,519 + +0.3
243,531 - +0.8
243,531 - +1.0
243,841 - GFF1595 0.17 -0.5
243,841 - GFF1595 0.17 -0.1
243,841 - GFF1595 0.17 +0.5
244,033 - GFF1595 0.28 +0.3
244,033 - GFF1595 0.28 +0.1
244,035 + GFF1595 0.28 +1.4
244,035 + GFF1595 0.28 +1.1
244,035 + GFF1595 0.28 -0.6
244,035 + GFF1595 0.28 +1.5
244,035 + GFF1595 0.28 +0.5
244,035 + GFF1595 0.28 +0.8
244,036 - GFF1595 0.28 +0.1
244,036 - GFF1595 0.28 +0.2
244,036 - GFF1595 0.28 -0.5
244,036 - GFF1595 0.28 +0.2
244,036 - GFF1595 0.28 +0.8
244,036 - GFF1595 0.28 -0.0
244,071 + GFF1595 0.30 +0.2
244,072 - GFF1595 0.30 -0.0
244,072 - GFF1595 0.30 -0.3
244,072 - GFF1595 0.30 +1.4
244,072 - GFF1595 0.30 -0.2
244,108 - GFF1595 0.32 +0.6
244,224 + GFF1595 0.38 -0.0
244,224 + GFF1595 0.38 -0.2
244,378 - GFF1595 0.47 -0.8
244,707 + GFF1595 0.65 +0.7
244,707 + GFF1595 0.65 +0.0
244,708 - GFF1595 0.65 -1.2
244,708 - GFF1595 0.65 +0.1
244,962 + GFF1595 0.79 -0.4
244,962 + GFF1595 0.79 +1.3
244,962 + GFF1595 0.79 +0.7
244,962 + GFF1595 0.79 -1.1
244,962 + GFF1595 0.79 -0.6
244,962 + GFF1595 0.79 -0.1
244,971 + GFF1595 0.80 -0.4
245,150 + GFF1595 0.90 +1.0
245,151 - GFF1595 0.90 -0.9
245,151 - GFF1595 0.90 +0.3
245,326 - +0.7
245,326 - +0.5
245,362 - +2.2
245,362 - +0.8
245,362 - +1.0
245,461 + +0.8
245,461 + +0.3
245,461 + +1.8
245,611 + GFF1596 0.23 -0.1
245,611 + GFF1596 0.23 +0.7
245,844 - GFF1596 0.43 -0.3
245,985 + GFF1596 0.56 +0.9
245,986 - GFF1596 0.56 -0.7
245,986 - GFF1596 0.56 +0.8
245,992 - GFF1596 0.56 +0.6
245,992 - GFF1596 0.56 -0.1
246,070 + GFF1596 0.63 -0.3
246,126 + GFF1596 0.68 +1.0
246,166 - GFF1596 0.72 +1.3
246,166 - GFF1596 0.72 -0.5
246,166 - GFF1596 0.72 +1.3
246,298 + GFF1596 0.83 -0.8
246,298 + GFF1596 0.83 +0.8
246,298 + GFF1596 0.83 -0.0
246,298 + GFF1596 0.83 +0.8
246,298 + GFF1596 0.83 +0.8
246,298 + GFF1596 0.83 -0.8
246,298 + GFF1596 0.83 +0.5
246,299 - GFF1596 0.83 -0.4
246,299 - GFF1596 0.83 -1.6

Or see this region's nucleotide sequence