Strain Fitness in Xanthobacter sp. DMC5 around GFF1563

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1562 and GFF1563 are separated by 269 nucleotidesGFF1563 and GFF1564 are separated by 6 nucleotides GFF1562 - Formamidase, at 201,525 to 202,751 GFF1562 GFF1563 - Transcriptional regulatory protein OmpR, at 203,021 to 203,731 GFF1563 GFF1564 - Sensor histidine kinase RcsC, at 203,738 to 204,901 GFF1564 Position (kb) 203 204Strain fitness (log2 ratio) -2 -1 0 1at 202.030 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.031 kb on - strand, within GFF1562at 202.031 kb on - strand, within GFF1562at 202.031 kb on - strand, within GFF1562at 202.042 kb on + strand, within GFF1562at 202.042 kb on + strand, within GFF1562at 202.180 kb on + strand, within GFF1562at 202.180 kb on + strand, within GFF1562at 202.181 kb on - strand, within GFF1562at 202.181 kb on - strand, within GFF1562at 202.181 kb on - strand, within GFF1562at 202.312 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.346 kb on - strand, within GFF1562at 202.346 kb on - strand, within GFF1562at 202.346 kb on - strand, within GFF1562at 202.346 kb on - strand, within GFF1562at 202.390 kb on + strand, within GFF1562at 202.478 kb on + strand, within GFF1562at 202.479 kb on - strand, within GFF1562at 202.538 kb on - strand, within GFF1562at 202.839 kb on - strandat 202.839 kb on - strandat 202.851 kb on + strandat 202.851 kb on + strandat 202.852 kb on - strandat 202.886 kb on - strandat 202.938 kb on - strandat 203.300 kb on + strand, within GFF1563at 203.300 kb on + strand, within GFF1563at 203.300 kb on + strand, within GFF1563at 203.300 kb on + strand, within GFF1563at 203.300 kb on + strand, within GFF1563at 203.300 kb on + strand, within GFF1563at 203.301 kb on - strand, within GFF1563at 203.301 kb on - strand, within GFF1563at 203.301 kb on - strand, within GFF1563at 203.301 kb on - strand, within GFF1563at 203.301 kb on - strand, within GFF1563at 203.702 kb on + strandat 203.702 kb on + strandat 203.702 kb on + strandat 203.702 kb on + strandat 203.703 kb on - strandat 203.703 kb on - strandat 203.703 kb on - strandat 203.703 kb on - strandat 203.703 kb on - strandat 203.703 kb on - strandat 203.967 kb on + strand, within GFF1564at 203.968 kb on - strand, within GFF1564at 203.968 kb on - strand, within GFF1564at 204.380 kb on + strand, within GFF1564at 204.380 kb on + strand, within GFF1564at 204.380 kb on + strand, within GFF1564at 204.381 kb on - strand, within GFF1564at 204.381 kb on - strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.583 kb on - strand, within GFF1564at 204.583 kb on - strand, within GFF1564at 204.583 kb on - strand, within GFF1564at 204.633 kb on + strand, within GFF1564at 204.634 kb on - strand, within GFF1564

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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202,030 + GFF1562 0.41 +1.2
202,030 + GFF1562 0.41 -0.2
202,030 + GFF1562 0.41 -0.8
202,030 + GFF1562 0.41 -0.3
202,030 + GFF1562 0.41 -0.3
202,031 - GFF1562 0.41 +0.3
202,031 - GFF1562 0.41 -1.4
202,031 - GFF1562 0.41 -0.7
202,042 + GFF1562 0.42 -0.6
202,042 + GFF1562 0.42 -1.2
202,180 + GFF1562 0.53 -0.3
202,180 + GFF1562 0.53 -0.5
202,181 - GFF1562 0.53 +0.0
202,181 - GFF1562 0.53 -0.5
202,181 - GFF1562 0.53 +0.5
202,312 + GFF1562 0.64 +0.3
202,345 + GFF1562 0.67 -1.5
202,345 + GFF1562 0.67 -0.0
202,345 + GFF1562 0.67 +0.4
202,345 + GFF1562 0.67 +0.3
202,345 + GFF1562 0.67 +0.2
202,345 + GFF1562 0.67 -0.1
202,346 - GFF1562 0.67 -0.3
202,346 - GFF1562 0.67 -0.1
202,346 - GFF1562 0.67 -0.0
202,346 - GFF1562 0.67 -0.0
202,390 + GFF1562 0.70 -0.6
202,478 + GFF1562 0.78 +0.7
202,479 - GFF1562 0.78 +0.1
202,538 - GFF1562 0.83 -0.6
202,839 - -1.0
202,839 - +0.2
202,851 + +0.1
202,851 + +0.2
202,852 - +0.5
202,886 - -0.8
202,938 - -0.7
203,300 + GFF1563 0.39 -0.7
203,300 + GFF1563 0.39 -0.3
203,300 + GFF1563 0.39 -1.3
203,300 + GFF1563 0.39 +0.4
203,300 + GFF1563 0.39 -0.4
203,300 + GFF1563 0.39 -0.5
203,301 - GFF1563 0.39 +0.0
203,301 - GFF1563 0.39 -2.0
203,301 - GFF1563 0.39 -0.5
203,301 - GFF1563 0.39 -0.2
203,301 - GFF1563 0.39 +0.8
203,702 + -0.3
203,702 + +0.2
203,702 + -0.4
203,702 + -0.6
203,703 - +0.5
203,703 - +0.1
203,703 - +0.3
203,703 - -0.3
203,703 - +1.3
203,703 - -0.6
203,967 + GFF1564 0.20 +0.5
203,968 - GFF1564 0.20 -0.7
203,968 - GFF1564 0.20 -0.4
204,380 + GFF1564 0.55 +0.6
204,380 + GFF1564 0.55 +0.2
204,380 + GFF1564 0.55 -0.9
204,381 - GFF1564 0.55 -2.5
204,381 - GFF1564 0.55 -0.2
204,582 + GFF1564 0.73 +1.0
204,582 + GFF1564 0.73 +0.1
204,582 + GFF1564 0.73 -1.5
204,582 + GFF1564 0.73 +0.1
204,582 + GFF1564 0.73 +0.8
204,582 + GFF1564 0.73 +0.3
204,582 + GFF1564 0.73 -0.7
204,582 + GFF1564 0.73 +0.0
204,583 - GFF1564 0.73 -0.9
204,583 - GFF1564 0.73 -1.0
204,583 - GFF1564 0.73 -1.0
204,633 + GFF1564 0.77 -0.5
204,634 - GFF1564 0.77 +0.0

Or see this region's nucleotide sequence