Strain Fitness in Xanthobacter sp. DMC5 around GFF1553

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1551 and GFF1552 overlap by 4 nucleotidesGFF1552 and GFF1553 are separated by 19 nucleotidesGFF1553 and GFF1554 are separated by 7 nucleotides GFF1551 - Glycerol dehydrogenase, at 190,080 to 191,162 GFF1551 GFF1552 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 191,159 to 191,935 GFF1552 GFF1553 - Inner membrane ABC transporter permease protein YcjP, at 191,955 to 192,794 GFF1553 GFF1554 - Inner membrane ABC transporter permease protein YcjO, at 192,802 to 193,662 GFF1554 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 191.124 kb on + strandat 191.124 kb on + strandat 191.125 kb on - strandat 191.125 kb on - strandat 191.125 kb on - strandat 191.125 kb on - strandat 191.128 kb on + strandat 191.178 kb on - strandat 191.457 kb on + strand, within GFF1552at 191.457 kb on + strand, within GFF1552at 191.458 kb on - strand, within GFF1552at 191.458 kb on - strand, within GFF1552at 191.761 kb on + strand, within GFF1552at 191.995 kb on + strandat 191.995 kb on + strandat 191.996 kb on - strandat 192.151 kb on + strand, within GFF1553at 192.152 kb on - strand, within GFF1553at 192.152 kb on - strand, within GFF1553at 192.152 kb on - strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.156 kb on - strand, within GFF1553at 192.156 kb on - strand, within GFF1553at 192.157 kb on + strand, within GFF1553at 192.157 kb on + strand, within GFF1553at 192.157 kb on + strand, within GFF1553at 192.158 kb on - strand, within GFF1553at 192.198 kb on - strand, within GFF1553at 192.198 kb on - strand, within GFF1553at 192.404 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.451 kb on + strand, within GFF1553at 192.509 kb on - strand, within GFF1553at 192.589 kb on + strand, within GFF1553at 192.590 kb on - strand, within GFF1553at 192.615 kb on - strand, within GFF1553at 192.617 kb on - strand, within GFF1553at 192.703 kb on + strand, within GFF1553at 192.704 kb on - strand, within GFF1553at 192.704 kb on - strand, within GFF1553at 192.704 kb on - strand, within GFF1553at 192.721 kb on + strandat 192.722 kb on - strandat 192.722 kb on - strandat 192.748 kb on + strandat 192.748 kb on + strandat 192.833 kb on + strandat 192.833 kb on + strandat 192.833 kb on + strandat 192.834 kb on - strandat 192.923 kb on + strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 193.116 kb on - strand, within GFF1554at 193.161 kb on + strand, within GFF1554at 193.161 kb on + strand, within GFF1554at 193.190 kb on - strand, within GFF1554at 193.340 kb on + strand, within GFF1554at 193.341 kb on - strand, within GFF1554at 193.341 kb on - strand, within GFF1554at 193.369 kb on - strand, within GFF1554at 193.369 kb on - strand, within GFF1554at 193.434 kb on + strand, within GFF1554at 193.434 kb on + strand, within GFF1554at 193.435 kb on - strand, within GFF1554at 193.451 kb on + strand, within GFF1554at 193.508 kb on + strand, within GFF1554at 193.559 kb on + strand, within GFF1554at 193.560 kb on - strand, within GFF1554at 193.581 kb on - strandat 193.599 kb on + strandat 193.641 kb on - strandat 193.641 kb on - strandat 193.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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191,124 + -0.3
191,124 + +0.2
191,125 - +0.9
191,125 - +0.4
191,125 - +0.1
191,125 - -0.3
191,128 + +0.3
191,178 - +0.3
191,457 + GFF1552 0.38 +0.3
191,457 + GFF1552 0.38 +0.0
191,458 - GFF1552 0.38 -1.5
191,458 - GFF1552 0.38 -0.7
191,761 + GFF1552 0.77 -0.2
191,995 + -0.1
191,995 + -1.0
191,996 - +0.5
192,151 + GFF1553 0.23 -0.8
192,152 - GFF1553 0.23 +0.4
192,152 - GFF1553 0.23 -0.3
192,152 - GFF1553 0.23 -0.8
192,155 + GFF1553 0.24 -0.4
192,155 + GFF1553 0.24 -0.5
192,155 + GFF1553 0.24 +1.0
192,155 + GFF1553 0.24 +0.6
192,155 + GFF1553 0.24 +0.5
192,156 - GFF1553 0.24 -0.8
192,156 - GFF1553 0.24 -0.9
192,157 + GFF1553 0.24 -0.9
192,157 + GFF1553 0.24 +0.4
192,157 + GFF1553 0.24 +0.4
192,158 - GFF1553 0.24 +0.5
192,198 - GFF1553 0.29 -1.0
192,198 - GFF1553 0.29 -1.9
192,404 + GFF1553 0.53 +2.4
192,445 + GFF1553 0.58 +0.1
192,445 + GFF1553 0.58 +0.2
192,445 + GFF1553 0.58 -0.1
192,445 + GFF1553 0.58 +0.9
192,445 + GFF1553 0.58 +0.3
192,445 + GFF1553 0.58 -0.3
192,445 + GFF1553 0.58 -0.5
192,445 + GFF1553 0.58 -0.3
192,445 + GFF1553 0.58 +0.1
192,445 + GFF1553 0.58 +0.2
192,445 + GFF1553 0.58 +0.2
192,445 + GFF1553 0.58 +0.4
192,446 - GFF1553 0.58 +0.6
192,446 - GFF1553 0.58 -0.3
192,446 - GFF1553 0.58 -0.1
192,446 - GFF1553 0.58 +0.0
192,446 - GFF1553 0.58 -0.6
192,451 + GFF1553 0.59 -0.2
192,509 - GFF1553 0.66 -0.2
192,589 + GFF1553 0.75 -0.2
192,590 - GFF1553 0.76 -1.2
192,615 - GFF1553 0.79 +0.3
192,617 - GFF1553 0.79 -0.3
192,703 + GFF1553 0.89 -0.2
192,704 - GFF1553 0.89 +1.0
192,704 - GFF1553 0.89 -2.3
192,704 - GFF1553 0.89 -0.1
192,721 + -0.6
192,722 - +1.5
192,722 - -1.7
192,748 + +0.0
192,748 + +0.5
192,833 + -0.3
192,833 + -0.1
192,833 + -0.4
192,834 - -0.3
192,923 + GFF1554 0.14 +1.7
192,924 - GFF1554 0.14 +0.2
192,924 - GFF1554 0.14 -0.5
192,924 - GFF1554 0.14 -0.8
192,924 - GFF1554 0.14 +0.3
192,924 - GFF1554 0.14 +1.2
193,116 - GFF1554 0.36 +0.5
193,161 + GFF1554 0.42 -0.7
193,161 + GFF1554 0.42 +0.6
193,190 - GFF1554 0.45 +1.0
193,340 + GFF1554 0.62 -0.1
193,341 - GFF1554 0.63 -1.3
193,341 - GFF1554 0.63 -2.9
193,369 - GFF1554 0.66 -0.4
193,369 - GFF1554 0.66 -0.5
193,434 + GFF1554 0.73 +2.0
193,434 + GFF1554 0.73 -0.3
193,435 - GFF1554 0.74 +0.6
193,451 + GFF1554 0.75 -0.5
193,508 + GFF1554 0.82 +0.0
193,559 + GFF1554 0.88 -0.1
193,560 - GFF1554 0.88 +0.0
193,581 - -0.4
193,599 + +0.8
193,641 - -0.1
193,641 - -0.2
193,641 - +0.2

Or see this region's nucleotide sequence