Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1538 and GFF1539 are separated by 11 nucleotides GFF1539 and GFF1540 are separated by 133 nucleotides GFF1540 and GFF1541 are separated by 192 nucleotides
GFF1538 - Non-heme chloroperoxidase, at 179,679 to 180,692
GFF1538
GFF1539 - hypothetical protein, at 180,704 to 181,357
GFF1539
GFF1540 - hypothetical protein, at 181,491 to 181,808
GFF1540
GFF1541 - HTH-type transcriptional activator RhaR, at 182,001 to 182,897
GFF1541
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 180.741 kb on + strand at 180.741 kb on + strand at 180.742 kb on - strand at 180.760 kb on - strand at 180.760 kb on - strand at 180.771 kb on + strand, within GFF1539 at 180.771 kb on + strand, within GFF1539 at 180.772 kb on - strand, within GFF1539 at 180.772 kb on - strand, within GFF1539 at 180.772 kb on - strand, within GFF1539 at 180.801 kb on + strand, within GFF1539 at 180.801 kb on + strand, within GFF1539 at 180.802 kb on - strand, within GFF1539 at 180.802 kb on - strand, within GFF1539 at 180.843 kb on + strand, within GFF1539 at 180.843 kb on + strand, within GFF1539 at 180.843 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.946 kb on - strand, within GFF1539 at 180.946 kb on - strand, within GFF1539 at 180.946 kb on - strand, within GFF1539 at 180.946 kb on - strand, within GFF1539 at 181.303 kb on + strand at 181.327 kb on + strand at 181.422 kb on - strand at 181.660 kb on - strand, within GFF1540 at 181.704 kb on + strand, within GFF1540 at 181.705 kb on - strand, within GFF1540 at 181.767 kb on + strand, within GFF1540 at 181.768 kb on - strand, within GFF1540 at 181.919 kb on + strand at 181.919 kb on + strand at 181.920 kb on - strand at 181.920 kb on - strand at 182.154 kb on + strand, within GFF1541 at 182.154 kb on + strand, within GFF1541 at 182.155 kb on - strand, within GFF1541 at 182.155 kb on - strand, within GFF1541 at 182.353 kb on + strand, within GFF1541 at 182.602 kb on + strand, within GFF1541 at 182.602 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.627 kb on - strand, within GFF1541 at 182.650 kb on + strand, within GFF1541
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 180,741 + +0.5 180,741 + -0.2 180,742 - +0.5 180,760 - +0.4 180,760 - +1.4 180,771 + GFF1539 0.10 -0.8 180,771 + GFF1539 0.10 +0.2 180,772 - GFF1539 0.10 -1.3 180,772 - GFF1539 0.10 +1.6 180,772 - GFF1539 0.10 +0.5 180,801 + GFF1539 0.15 -0.5 180,801 + GFF1539 0.15 +0.0 180,802 - GFF1539 0.15 -0.6 180,802 - GFF1539 0.15 +0.0 180,843 + GFF1539 0.21 +0.5 180,843 + GFF1539 0.21 -0.6 180,843 + GFF1539 0.21 -2.2 180,945 + GFF1539 0.37 -0.0 180,945 + GFF1539 0.37 -0.1 180,945 + GFF1539 0.37 -1.2 180,945 + GFF1539 0.37 -0.1 180,945 + GFF1539 0.37 -0.5 180,946 - GFF1539 0.37 -0.3 180,946 - GFF1539 0.37 +0.0 180,946 - GFF1539 0.37 -0.3 180,946 - GFF1539 0.37 -0.0 181,303 + -0.7 181,327 + -0.3 181,422 - +0.0 181,660 - GFF1540 0.53 +0.7 181,704 + GFF1540 0.67 -0.0 181,705 - GFF1540 0.67 -0.0 181,767 + GFF1540 0.87 +1.0 181,768 - GFF1540 0.87 +1.2 181,919 + +0.7 181,919 + -1.2 181,920 - +0.9 181,920 - +0.1 182,154 + GFF1541 0.17 -0.1 182,154 + GFF1541 0.17 -1.1 182,155 - GFF1541 0.17 -1.5 182,155 - GFF1541 0.17 -0.7 182,353 + GFF1541 0.39 +1.5 182,602 + GFF1541 0.67 +1.6 182,602 + GFF1541 0.67 -1.1 182,626 + GFF1541 0.70 -1.5 182,626 + GFF1541 0.70 -0.3 182,626 + GFF1541 0.70 +0.2 182,626 + GFF1541 0.70 +0.2 182,626 + GFF1541 0.70 -0.8 182,627 - GFF1541 0.70 +0.5 182,650 + GFF1541 0.72 -1.3
Or see this region's nucleotide sequence