Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1536 and GFF1537 are separated by 38 nucleotides GFF1537 and GFF1538 are separated by 61 nucleotides GFF1538 and GFF1539 are separated by 11 nucleotides GFF1539 and GFF1540 are separated by 133 nucleotides
GFF1536 - Imidazolonepropionase, at 177,426 to 179,291
GFF1536
GFF1537 - hypothetical protein, at 179,330 to 179,617
GFF1537
GFF1538 - Non-heme chloroperoxidase, at 179,679 to 180,692
GFF1538
GFF1539 - hypothetical protein, at 180,704 to 181,357
GFF1539
GFF1540 - hypothetical protein, at 181,491 to 181,808
GFF1540
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.703 kb on - strand, within GFF1536 at 178.703 kb on - strand, within GFF1536 at 178.804 kb on + strand, within GFF1536 at 178.804 kb on + strand, within GFF1536 at 178.804 kb on + strand, within GFF1536 at 178.849 kb on + strand, within GFF1536 at 178.850 kb on - strand, within GFF1536 at 179.056 kb on + strand, within GFF1536 at 179.056 kb on + strand, within GFF1536 at 179.057 kb on - strand, within GFF1536 at 179.565 kb on + strand, within GFF1537 at 179.565 kb on + strand, within GFF1537 at 179.566 kb on - strand, within GFF1537 at 179.566 kb on - strand, within GFF1537 at 179.566 kb on - strand, within GFF1537 at 179.566 kb on - strand, within GFF1537 at 179.608 kb on - strand at 179.758 kb on + strand at 179.759 kb on - strand at 179.921 kb on - strand, within GFF1538 at 179.921 kb on - strand, within GFF1538 at 179.921 kb on - strand, within GFF1538 at 179.921 kb on - strand, within GFF1538 at 180.010 kb on + strand, within GFF1538 at 180.010 kb on + strand, within GFF1538 at 180.010 kb on + strand, within GFF1538 at 180.011 kb on - strand, within GFF1538 at 180.011 kb on - strand, within GFF1538 at 180.193 kb on + strand, within GFF1538 at 180.193 kb on + strand, within GFF1538 at 180.194 kb on - strand, within GFF1538 at 180.286 kb on + strand, within GFF1538 at 180.286 kb on + strand, within GFF1538 at 180.286 kb on + strand, within GFF1538 at 180.470 kb on - strand, within GFF1538 at 180.741 kb on + strand at 180.741 kb on + strand at 180.742 kb on - strand at 180.760 kb on - strand at 180.760 kb on - strand at 180.771 kb on + strand, within GFF1539 at 180.771 kb on + strand, within GFF1539 at 180.772 kb on - strand, within GFF1539 at 180.772 kb on - strand, within GFF1539 at 180.772 kb on - strand, within GFF1539 at 180.801 kb on + strand, within GFF1539 at 180.801 kb on + strand, within GFF1539 at 180.802 kb on - strand, within GFF1539 at 180.802 kb on - strand, within GFF1539 at 180.843 kb on + strand, within GFF1539 at 180.843 kb on + strand, within GFF1539 at 180.843 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.945 kb on + strand, within GFF1539 at 180.946 kb on - strand, within GFF1539 at 180.946 kb on - strand, within GFF1539 at 180.946 kb on - strand, within GFF1539 at 180.946 kb on - strand, within GFF1539 at 181.303 kb on + strand at 181.327 kb on + strand at 181.422 kb on - strand at 181.660 kb on - strand, within GFF1540
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 178,703 - GFF1536 0.68 -1.2 178,703 - GFF1536 0.68 +1.8 178,804 + GFF1536 0.74 +0.5 178,804 + GFF1536 0.74 +0.3 178,804 + GFF1536 0.74 -0.1 178,849 + GFF1536 0.76 -0.2 178,850 - GFF1536 0.76 +0.1 179,056 + GFF1536 0.87 -1.1 179,056 + GFF1536 0.87 +0.5 179,057 - GFF1536 0.87 -0.3 179,565 + GFF1537 0.82 +1.9 179,565 + GFF1537 0.82 +0.0 179,566 - GFF1537 0.82 +0.8 179,566 - GFF1537 0.82 -0.4 179,566 - GFF1537 0.82 -0.1 179,566 - GFF1537 0.82 -0.4 179,608 - -0.4 179,758 + -1.0 179,759 - +0.4 179,921 - GFF1538 0.24 -1.0 179,921 - GFF1538 0.24 -0.5 179,921 - GFF1538 0.24 -0.4 179,921 - GFF1538 0.24 -0.3 180,010 + GFF1538 0.33 +0.1 180,010 + GFF1538 0.33 +0.8 180,010 + GFF1538 0.33 +2.0 180,011 - GFF1538 0.33 -0.2 180,011 - GFF1538 0.33 +1.3 180,193 + GFF1538 0.51 -0.3 180,193 + GFF1538 0.51 -0.4 180,194 - GFF1538 0.51 +1.5 180,286 + GFF1538 0.60 -0.4 180,286 + GFF1538 0.60 -0.3 180,286 + GFF1538 0.60 -0.3 180,470 - GFF1538 0.78 -0.3 180,741 + +0.5 180,741 + -0.2 180,742 - +0.5 180,760 - +0.4 180,760 - +1.4 180,771 + GFF1539 0.10 -0.8 180,771 + GFF1539 0.10 +0.2 180,772 - GFF1539 0.10 -1.3 180,772 - GFF1539 0.10 +1.6 180,772 - GFF1539 0.10 +0.5 180,801 + GFF1539 0.15 -0.5 180,801 + GFF1539 0.15 +0.0 180,802 - GFF1539 0.15 -0.6 180,802 - GFF1539 0.15 +0.0 180,843 + GFF1539 0.21 +0.5 180,843 + GFF1539 0.21 -0.6 180,843 + GFF1539 0.21 -2.2 180,945 + GFF1539 0.37 -0.0 180,945 + GFF1539 0.37 -0.1 180,945 + GFF1539 0.37 -1.2 180,945 + GFF1539 0.37 -0.1 180,945 + GFF1539 0.37 -0.5 180,946 - GFF1539 0.37 -0.3 180,946 - GFF1539 0.37 +0.0 180,946 - GFF1539 0.37 -0.3 180,946 - GFF1539 0.37 -0.0 181,303 + -0.7 181,327 + -0.3 181,422 - +0.0 181,660 - GFF1540 0.53 +0.7
Or see this region's nucleotide sequence