Strain Fitness in Xanthobacter sp. DMC5 around GFF1496

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1495 and GFF1496 are separated by 161 nucleotidesGFF1496 and GFF1497 are separated by 65 nucleotidesGFF1497 and GFF1498 are separated by 102 nucleotides GFF1495 - 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxonon atrienedioate hydrolase, at 133,775 to 134,680 GFF1495 GFF1496 - Histidinol-phosphate aminotransferase, at 134,842 to 135,975 GFF1496 GFF1497 - NADPH-dependent reductase BacG, at 136,041 to 136,820 GFF1497 GFF1498 - putative D-xylose utilization operon transcriptional repressor, at 136,923 to 137,636 GFF1498 Position (kb) 134 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 133.903 kb on + strand, within GFF1495at 133.903 kb on + strand, within GFF1495at 133.959 kb on + strand, within GFF1495at 133.960 kb on - strand, within GFF1495at 134.191 kb on - strand, within GFF1495at 134.262 kb on + strand, within GFF1495at 134.262 kb on + strand, within GFF1495at 134.262 kb on + strand, within GFF1495at 134.451 kb on + strand, within GFF1495at 134.451 kb on + strand, within GFF1495at 134.451 kb on + strand, within GFF1495at 134.502 kb on + strand, within GFF1495at 134.502 kb on + strand, within GFF1495at 134.503 kb on - strand, within GFF1495at 134.650 kb on + strandat 134.673 kb on + strandat 134.673 kb on + strandat 134.673 kb on + strandat 134.674 kb on - strandat 134.674 kb on - strandat 134.674 kb on - strandat 134.981 kb on + strand, within GFF1496at 134.981 kb on + strand, within GFF1496at 134.981 kb on + strand, within GFF1496at 134.981 kb on + strand, within GFF1496at 134.981 kb on + strand, within GFF1496at 134.981 kb on + strand, within GFF1496at 134.981 kb on + strand, within GFF1496at 134.982 kb on - strand, within GFF1496at 134.982 kb on - strand, within GFF1496at 134.982 kb on - strand, within GFF1496at 134.982 kb on - strand, within GFF1496at 134.982 kb on - strand, within GFF1496at 134.982 kb on - strand, within GFF1496at 134.982 kb on - strand, within GFF1496at 135.092 kb on + strand, within GFF1496at 135.092 kb on + strand, within GFF1496at 135.092 kb on + strand, within GFF1496at 135.093 kb on - strand, within GFF1496at 135.411 kb on - strand, within GFF1496at 135.411 kb on - strand, within GFF1496at 135.411 kb on - strand, within GFF1496at 135.521 kb on + strand, within GFF1496at 135.521 kb on + strand, within GFF1496at 135.521 kb on + strand, within GFF1496at 135.522 kb on - strand, within GFF1496at 135.596 kb on + strand, within GFF1496at 135.596 kb on + strand, within GFF1496at 135.596 kb on + strand, within GFF1496at 135.597 kb on - strand, within GFF1496at 135.597 kb on - strand, within GFF1496at 135.597 kb on - strand, within GFF1496at 135.597 kb on - strand, within GFF1496at 135.821 kb on + strand, within GFF1496at 135.822 kb on - strand, within GFF1496at 135.943 kb on + strandat 135.944 kb on - strandat 135.947 kb on + strandat 135.948 kb on - strandat 136.103 kb on - strandat 136.177 kb on + strand, within GFF1497at 136.178 kb on - strand, within GFF1497at 136.375 kb on + strand, within GFF1497at 136.375 kb on + strand, within GFF1497at 136.375 kb on + strand, within GFF1497at 136.376 kb on - strand, within GFF1497at 136.376 kb on - strand, within GFF1497at 136.450 kb on + strand, within GFF1497at 136.450 kb on + strand, within GFF1497at 136.453 kb on + strand, within GFF1497at 136.453 kb on + strand, within GFF1497at 136.454 kb on - strand, within GFF1497at 136.489 kb on - strand, within GFF1497at 136.489 kb on - strand, within GFF1497at 136.636 kb on + strand, within GFF1497at 136.636 kb on + strand, within GFF1497at 136.650 kb on + strand, within GFF1497

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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133,903 + GFF1495 0.14 +0.8
133,903 + GFF1495 0.14 +0.1
133,959 + GFF1495 0.20 -0.1
133,960 - GFF1495 0.20 -1.3
134,191 - GFF1495 0.46 -0.9
134,262 + GFF1495 0.54 -0.2
134,262 + GFF1495 0.54 -0.3
134,262 + GFF1495 0.54 -0.7
134,451 + GFF1495 0.75 +0.1
134,451 + GFF1495 0.75 -1.0
134,451 + GFF1495 0.75 -1.3
134,502 + GFF1495 0.80 -0.5
134,502 + GFF1495 0.80 -0.2
134,503 - GFF1495 0.80 +2.0
134,650 + -0.7
134,673 + -0.4
134,673 + -0.0
134,673 + +0.5
134,674 - -0.8
134,674 - +0.2
134,674 - +1.0
134,981 + GFF1496 0.12 +0.5
134,981 + GFF1496 0.12 +0.0
134,981 + GFF1496 0.12 -1.4
134,981 + GFF1496 0.12 -1.6
134,981 + GFF1496 0.12 -1.2
134,981 + GFF1496 0.12 +0.2
134,981 + GFF1496 0.12 +0.3
134,982 - GFF1496 0.12 -1.1
134,982 - GFF1496 0.12 +0.5
134,982 - GFF1496 0.12 -0.5
134,982 - GFF1496 0.12 +0.6
134,982 - GFF1496 0.12 -0.9
134,982 - GFF1496 0.12 +0.2
134,982 - GFF1496 0.12 -0.5
135,092 + GFF1496 0.22 -0.8
135,092 + GFF1496 0.22 -0.0
135,092 + GFF1496 0.22 +0.9
135,093 - GFF1496 0.22 +0.5
135,411 - GFF1496 0.50 +1.8
135,411 - GFF1496 0.50 -2.0
135,411 - GFF1496 0.50 -0.2
135,521 + GFF1496 0.60 +0.4
135,521 + GFF1496 0.60 -0.2
135,521 + GFF1496 0.60 -0.1
135,522 - GFF1496 0.60 -0.5
135,596 + GFF1496 0.66 -0.3
135,596 + GFF1496 0.66 +0.6
135,596 + GFF1496 0.66 +1.2
135,597 - GFF1496 0.67 -0.4
135,597 - GFF1496 0.67 -0.4
135,597 - GFF1496 0.67 +1.0
135,597 - GFF1496 0.67 +0.5
135,821 + GFF1496 0.86 +0.9
135,822 - GFF1496 0.86 +0.7
135,943 + -0.7
135,944 - +0.2
135,947 + +0.5
135,948 - +0.0
136,103 - -0.3
136,177 + GFF1497 0.17 +0.5
136,178 - GFF1497 0.18 +1.3
136,375 + GFF1497 0.43 +0.0
136,375 + GFF1497 0.43 -0.3
136,375 + GFF1497 0.43 -0.0
136,376 - GFF1497 0.43 -0.0
136,376 - GFF1497 0.43 -0.3
136,450 + GFF1497 0.52 -0.1
136,450 + GFF1497 0.52 -0.6
136,453 + GFF1497 0.53 +0.4
136,453 + GFF1497 0.53 +0.1
136,454 - GFF1497 0.53 +0.8
136,489 - GFF1497 0.57 +0.7
136,489 - GFF1497 0.57 +0.2
136,636 + GFF1497 0.76 +0.3
136,636 + GFF1497 0.76 -0.1
136,650 + GFF1497 0.78 +0.6

Or see this region's nucleotide sequence