Strain Fitness in Xanthobacter sp. DMC5 around GFF1489

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1488 and GFF1489 are separated by 471 nucleotidesGFF1489 and GFF1490 are separated by 15 nucleotides GFF1488 - hypothetical protein, at 126,825 to 128,528 GFF1488 GFF1489 - hypothetical protein, at 129,000 to 129,644 GFF1489 GFF1490 - hypothetical protein, at 129,660 to 130,601 GFF1490 Position (kb) 128 129 130Strain fitness (log2 ratio) -1 0 1at 128.029 kb on + strand, within GFF1488at 128.029 kb on + strand, within GFF1488at 128.030 kb on - strand, within GFF1488at 128.087 kb on + strand, within GFF1488at 128.088 kb on - strand, within GFF1488at 128.088 kb on - strand, within GFF1488at 128.102 kb on + strand, within GFF1488at 128.102 kb on + strand, within GFF1488at 128.158 kb on - strand, within GFF1488at 128.301 kb on - strand, within GFF1488at 128.302 kb on + strand, within GFF1488at 128.302 kb on + strand, within GFF1488at 128.302 kb on + strand, within GFF1488at 128.303 kb on - strand, within GFF1488at 128.313 kb on - strand, within GFF1488at 128.347 kb on + strand, within GFF1488at 128.347 kb on + strand, within GFF1488at 128.348 kb on - strand, within GFF1488at 128.348 kb on - strand, within GFF1488at 128.371 kb on + strandat 128.371 kb on + strandat 128.608 kb on + strandat 128.608 kb on + strandat 128.608 kb on + strandat 128.631 kb on + strandat 128.675 kb on + strandat 128.675 kb on + strandat 128.675 kb on + strandat 128.676 kb on - strandat 128.735 kb on - strandat 128.931 kb on + strandat 128.932 kb on - strandat 128.932 kb on - strandat 128.962 kb on + strandat 128.962 kb on + strandat 128.962 kb on + strandat 128.963 kb on - strandat 128.963 kb on - strandat 128.963 kb on - strandat 128.963 kb on - strandat 128.963 kb on - strandat 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.199 kb on - strand, within GFF1489at 129.199 kb on - strand, within GFF1489at 129.388 kb on - strand, within GFF1489at 129.661 kb on + strandat 129.856 kb on + strand, within GFF1490at 129.857 kb on - strand, within GFF1490at 129.990 kb on + strand, within GFF1490at 129.991 kb on - strand, within GFF1490at 130.297 kb on - strand, within GFF1490at 130.315 kb on + strand, within GFF1490at 130.315 kb on + strand, within GFF1490at 130.316 kb on - strand, within GFF1490at 130.483 kb on - strand, within GFF1490

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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128,029 + GFF1488 0.71 -0.4
128,029 + GFF1488 0.71 +0.8
128,030 - GFF1488 0.71 +1.0
128,087 + GFF1488 0.74 -0.9
128,088 - GFF1488 0.74 +0.5
128,088 - GFF1488 0.74 +0.6
128,102 + GFF1488 0.75 +0.2
128,102 + GFF1488 0.75 -0.1
128,158 - GFF1488 0.78 +0.8
128,301 - GFF1488 0.87 +0.0
128,302 + GFF1488 0.87 +1.0
128,302 + GFF1488 0.87 +1.2
128,302 + GFF1488 0.87 +0.0
128,303 - GFF1488 0.87 -0.7
128,313 - GFF1488 0.87 +0.2
128,347 + GFF1488 0.89 -1.5
128,347 + GFF1488 0.89 +0.8
128,348 - GFF1488 0.89 -0.4
128,348 - GFF1488 0.89 +0.5
128,371 + -0.7
128,371 + +0.2
128,608 + +0.7
128,608 + -0.6
128,608 + +0.9
128,631 + +0.6
128,675 + -0.4
128,675 + +0.0
128,675 + +0.1
128,676 - -0.0
128,735 - -0.4
128,931 + -0.5
128,932 - +0.0
128,932 - +0.8
128,962 + -0.4
128,962 + -0.5
128,962 + -0.8
128,963 - -0.0
128,963 - +0.6
128,963 - -0.1
128,963 - +0.0
128,963 - -0.1
129,198 + GFF1489 0.31 -0.3
129,198 + GFF1489 0.31 -1.0
129,198 + GFF1489 0.31 -0.2
129,198 + GFF1489 0.31 -0.6
129,198 + GFF1489 0.31 -0.0
129,198 + GFF1489 0.31 -0.2
129,199 - GFF1489 0.31 +0.1
129,199 - GFF1489 0.31 -0.3
129,388 - GFF1489 0.60 +0.7
129,661 + -0.4
129,856 + GFF1490 0.21 +0.9
129,857 - GFF1490 0.21 +0.7
129,990 + GFF1490 0.35 +0.4
129,991 - GFF1490 0.35 +0.1
130,297 - GFF1490 0.68 -0.2
130,315 + GFF1490 0.70 +0.2
130,315 + GFF1490 0.70 -0.7
130,316 - GFF1490 0.70 +1.0
130,483 - GFF1490 0.87 +1.2

Or see this region's nucleotide sequence