Strain Fitness in Xanthobacter sp. DMC5 around GFF1419

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1417 and GFF1418 are separated by 56 nucleotidesGFF1418 and GFF1419 are separated by 566 nucleotidesGFF1419 and GFF1420 are separated by 63 nucleotidesGFF1420 and GFF1421 are separated by 17 nucleotides GFF1417 - Polyphosphate:ADP phosphotransferase 3, at 38,432 to 39,298 GFF1417 GFF1418 - hypothetical protein, at 39,355 to 39,597 GFF1418 GFF1419 - Glucosamine kinase, at 40,164 to 43,367 GFF1419 GFF1420 - hypothetical protein, at 43,431 to 43,814 GFF1420 GFF1421 - hypothetical protein, at 43,832 to 44,788 GFF1421 Position (kb) 40 41 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2at 39.251 kb on + strandat 39.252 kb on - strandat 39.252 kb on - strandat 39.252 kb on - strandat 39.266 kb on + strandat 39.266 kb on + strandat 39.266 kb on + strandat 39.267 kb on - strandat 39.357 kb on - strandat 40.221 kb on + strandat 40.222 kb on - strandat 40.222 kb on - strandat 40.222 kb on - strandat 40.234 kb on + strandat 40.302 kb on + strandat 40.303 kb on - strandat 40.303 kb on - strandat 40.305 kb on - strandat 40.305 kb on - strandat 40.347 kb on + strandat 40.347 kb on + strandat 40.347 kb on + strandat 40.348 kb on - strandat 40.348 kb on - strandat 40.374 kb on + strandat 40.375 kb on - strandat 40.389 kb on + strandat 40.390 kb on - strandat 40.390 kb on - strandat 40.566 kb on + strand, within GFF1419at 40.566 kb on + strand, within GFF1419at 40.593 kb on + strand, within GFF1419at 40.668 kb on + strand, within GFF1419at 40.683 kb on + strand, within GFF1419at 40.684 kb on - strand, within GFF1419at 40.684 kb on - strand, within GFF1419at 40.684 kb on - strand, within GFF1419at 40.684 kb on - strand, within GFF1419at 40.801 kb on - strand, within GFF1419at 40.887 kb on + strand, within GFF1419at 40.887 kb on + strand, within GFF1419at 40.887 kb on + strand, within GFF1419at 40.890 kb on + strand, within GFF1419at 40.890 kb on + strand, within GFF1419at 40.891 kb on - strand, within GFF1419at 41.010 kb on + strand, within GFF1419at 41.010 kb on + strand, within GFF1419at 41.010 kb on + strand, within GFF1419at 41.011 kb on - strand, within GFF1419at 41.011 kb on - strand, within GFF1419at 41.011 kb on - strand, within GFF1419at 41.011 kb on - strand, within GFF1419at 41.172 kb on + strand, within GFF1419at 41.172 kb on + strand, within GFF1419at 41.172 kb on + strand, within GFF1419at 41.172 kb on + strand, within GFF1419at 41.173 kb on - strand, within GFF1419at 41.366 kb on + strand, within GFF1419at 41.366 kb on + strand, within GFF1419at 41.509 kb on + strand, within GFF1419at 41.510 kb on - strand, within GFF1419at 41.614 kb on - strand, within GFF1419at 41.759 kb on + strand, within GFF1419at 41.760 kb on - strand, within GFF1419at 41.788 kb on - strand, within GFF1419at 41.796 kb on + strand, within GFF1419at 41.796 kb on + strand, within GFF1419at 41.797 kb on - strand, within GFF1419at 41.956 kb on - strand, within GFF1419at 42.565 kb on - strand, within GFF1419at 43.182 kb on + strandat 43.262 kb on - strandat 43.262 kb on - strandat 43.731 kb on - strand, within GFF1420at 43.813 kb on - strandat 43.889 kb on - strandat 43.995 kb on + strand, within GFF1421at 43.995 kb on + strand, within GFF1421at 43.996 kb on - strand, within GFF1421at 44.214 kb on + strand, within GFF1421at 44.214 kb on + strand, within GFF1421at 44.215 kb on - strand, within GFF1421at 44.215 kb on - strand, within GFF1421at 44.215 kb on - strand, within GFF1421at 44.215 kb on - strand, within GFF1421

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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39,251 + +1.0
39,252 - -0.6
39,252 - -0.2
39,252 - +0.0
39,266 + +0.6
39,266 + -0.2
39,266 + +0.9
39,267 - -0.6
39,357 - +0.0
40,221 + +0.7
40,222 - -1.4
40,222 - -0.0
40,222 - -0.2
40,234 + -0.3
40,302 + -0.1
40,303 - +1.6
40,303 - +0.8
40,305 - +0.2
40,305 - -0.4
40,347 + -0.3
40,347 + -0.6
40,347 + +0.7
40,348 - +0.2
40,348 - -0.0
40,374 + +1.2
40,375 - -1.0
40,389 + +1.3
40,390 - +1.1
40,390 - -0.7
40,566 + GFF1419 0.13 -0.1
40,566 + GFF1419 0.13 +0.8
40,593 + GFF1419 0.13 -0.8
40,668 + GFF1419 0.16 +0.3
40,683 + GFF1419 0.16 +0.4
40,684 - GFF1419 0.16 -0.5
40,684 - GFF1419 0.16 -0.6
40,684 - GFF1419 0.16 +0.5
40,684 - GFF1419 0.16 -0.8
40,801 - GFF1419 0.20 +0.5
40,887 + GFF1419 0.23 -0.7
40,887 + GFF1419 0.23 -0.5
40,887 + GFF1419 0.23 +1.7
40,890 + GFF1419 0.23 -0.3
40,890 + GFF1419 0.23 -0.2
40,891 - GFF1419 0.23 -1.3
41,010 + GFF1419 0.26 +0.2
41,010 + GFF1419 0.26 +0.4
41,010 + GFF1419 0.26 -0.2
41,011 - GFF1419 0.26 -0.5
41,011 - GFF1419 0.26 +0.1
41,011 - GFF1419 0.26 -1.2
41,011 - GFF1419 0.26 +0.9
41,172 + GFF1419 0.31 +0.3
41,172 + GFF1419 0.31 -1.0
41,172 + GFF1419 0.31 -0.5
41,172 + GFF1419 0.31 -0.4
41,173 - GFF1419 0.31 +0.6
41,366 + GFF1419 0.38 +0.0
41,366 + GFF1419 0.38 +0.6
41,509 + GFF1419 0.42 +0.8
41,510 - GFF1419 0.42 +0.4
41,614 - GFF1419 0.45 -0.1
41,759 + GFF1419 0.50 +1.6
41,760 - GFF1419 0.50 -0.2
41,788 - GFF1419 0.51 +0.6
41,796 + GFF1419 0.51 +1.5
41,796 + GFF1419 0.51 -0.3
41,797 - GFF1419 0.51 +0.4
41,956 - GFF1419 0.56 +0.9
42,565 - GFF1419 0.75 -0.8
43,182 + -1.1
43,262 - +0.5
43,262 - +0.3
43,731 - GFF1420 0.78 +1.0
43,813 - -2.1
43,889 - -0.2
43,995 + GFF1421 0.17 +0.5
43,995 + GFF1421 0.17 +0.2
43,996 - GFF1421 0.17 -1.7
44,214 + GFF1421 0.40 +2.0
44,214 + GFF1421 0.40 -0.2
44,215 - GFF1421 0.40 -0.8
44,215 - GFF1421 0.40 +0.8
44,215 - GFF1421 0.40 +0.6
44,215 - GFF1421 0.40 +0.6

Or see this region's nucleotide sequence