Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1393 and GFF1394 are separated by 273 nucleotides GFF1394 and GFF1395 are separated by 69 nucleotides GFF1395 and GFF1396 overlap by 1 nucleotides
GFF1393 - hypothetical protein, at 12,135 to 12,872
GFF1393
GFF1394 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 13,146 to 14,330
GFF1394
GFF1395 - High-affinity branched-chain amino acid transport system permease protein LivH, at 14,400 to 15,272
GFF1395
GFF1396 - hypothetical protein, at 15,272 to 16,216
GFF1396
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.334 kb on + strand, within GFF1393 at 12.580 kb on + strand, within GFF1393 at 12.581 kb on - strand, within GFF1393 at 12.721 kb on + strand, within GFF1393 at 12.848 kb on - strand at 12.948 kb on - strand at 12.955 kb on - strand at 12.955 kb on - strand at 13.131 kb on + strand at 13.132 kb on - strand at 13.151 kb on + strand at 13.152 kb on - strand at 13.332 kb on + strand, within GFF1394 at 13.332 kb on + strand, within GFF1394 at 13.332 kb on + strand, within GFF1394 at 13.332 kb on + strand, within GFF1394 at 13.333 kb on - strand, within GFF1394 at 13.333 kb on - strand, within GFF1394 at 13.333 kb on - strand, within GFF1394 at 13.333 kb on - strand, within GFF1394 at 13.392 kb on + strand, within GFF1394 at 13.392 kb on + strand, within GFF1394 at 13.393 kb on - strand, within GFF1394 at 13.737 kb on + strand, within GFF1394 at 13.738 kb on - strand, within GFF1394 at 13.768 kb on - strand, within GFF1394 at 13.884 kb on + strand, within GFF1394 at 13.884 kb on + strand, within GFF1394 at 13.885 kb on - strand, within GFF1394 at 13.914 kb on + strand, within GFF1394 at 13.915 kb on - strand, within GFF1394 at 14.056 kb on - strand, within GFF1394 at 14.068 kb on - strand, within GFF1394 at 14.115 kb on + strand, within GFF1394 at 14.115 kb on + strand, within GFF1394 at 14.116 kb on - strand, within GFF1394 at 14.116 kb on - strand, within GFF1394 at 14.175 kb on + strand, within GFF1394 at 14.208 kb on + strand, within GFF1394 at 14.208 kb on + strand, within GFF1394 at 14.208 kb on + strand, within GFF1394 at 14.209 kb on - strand, within GFF1394 at 14.229 kb on + strand at 14.255 kb on - strand at 14.451 kb on + strand at 14.452 kb on - strand at 14.484 kb on + strand at 14.484 kb on + strand at 14.484 kb on + strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.862 kb on + strand, within GFF1395 at 14.863 kb on - strand, within GFF1395 at 15.039 kb on + strand, within GFF1395 at 15.040 kb on - strand, within GFF1395 at 15.165 kb on + strand, within GFF1395 at 15.166 kb on - strand, within GFF1395 at 15.180 kb on + strand, within GFF1395 at 15.180 kb on + strand, within GFF1395 at 15.180 kb on + strand, within GFF1395 at 15.180 kb on + strand, within GFF1395 at 15.181 kb on - strand, within GFF1395 at 15.181 kb on - strand, within GFF1395 at 15.181 kb on - strand, within GFF1395 at 15.181 kb on - strand, within GFF1395
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 12,334 + GFF1393 0.27 +1.6 12,580 + GFF1393 0.60 -0.1 12,581 - GFF1393 0.60 -1.0 12,721 + GFF1393 0.79 -0.3 12,848 - -0.1 12,948 - +0.3 12,955 - +0.1 12,955 - -0.5 13,131 + -1.1 13,132 - +0.2 13,151 + -2.5 13,152 - +0.9 13,332 + GFF1394 0.16 -0.4 13,332 + GFF1394 0.16 -0.3 13,332 + GFF1394 0.16 -0.5 13,332 + GFF1394 0.16 -1.0 13,333 - GFF1394 0.16 +0.4 13,333 - GFF1394 0.16 -0.4 13,333 - GFF1394 0.16 -0.4 13,333 - GFF1394 0.16 +0.4 13,392 + GFF1394 0.21 -0.3 13,392 + GFF1394 0.21 +0.2 13,393 - GFF1394 0.21 +0.4 13,737 + GFF1394 0.50 +0.7 13,738 - GFF1394 0.50 -0.1 13,768 - GFF1394 0.52 +0.0 13,884 + GFF1394 0.62 +0.7 13,884 + GFF1394 0.62 +0.8 13,885 - GFF1394 0.62 -1.0 13,914 + GFF1394 0.65 -0.0 13,915 - GFF1394 0.65 +0.9 14,056 - GFF1394 0.77 -0.8 14,068 - GFF1394 0.78 -0.3 14,115 + GFF1394 0.82 +0.5 14,115 + GFF1394 0.82 -0.1 14,116 - GFF1394 0.82 +0.7 14,116 - GFF1394 0.82 -0.1 14,175 + GFF1394 0.87 +0.1 14,208 + GFF1394 0.90 +0.3 14,208 + GFF1394 0.90 -0.1 14,208 + GFF1394 0.90 +0.7 14,209 - GFF1394 0.90 -0.0 14,229 + +0.1 14,255 - +0.0 14,451 + +0.6 14,452 - -0.3 14,484 + +1.9 14,484 + +1.7 14,484 + +0.2 14,485 - +0.6 14,485 - -0.3 14,485 - -0.5 14,485 - -0.2 14,485 - +0.2 14,862 + GFF1395 0.53 -0.5 14,863 - GFF1395 0.53 +0.5 15,039 + GFF1395 0.73 +0.4 15,040 - GFF1395 0.73 -0.7 15,165 + GFF1395 0.88 -0.9 15,166 - GFF1395 0.88 -1.2 15,180 + GFF1395 0.89 +1.0 15,180 + GFF1395 0.89 -0.3 15,180 + GFF1395 0.89 +0.6 15,180 + GFF1395 0.89 +1.0 15,181 - GFF1395 0.89 +0.7 15,181 - GFF1395 0.89 -0.4 15,181 - GFF1395 0.89 -0.2 15,181 - GFF1395 0.89 +0.5
Or see this region's nucleotide sequence