Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1348 and GFF1349 are separated by 18 nucleotides GFF1349 and GFF1350 overlap by 4 nucleotides GFF1350 and GFF1351 are separated by 33 nucleotides GFF1351 and GFF1352 are separated by 19 nucleotides
GFF1348 - Putative fluoride ion transporter CrcB, at 1,463,835 to 1,464,224
GFF1348
GFF1349 - hypothetical protein, at 1,464,243 to 1,464,521
GFF1349
GFF1350 - hypothetical protein, at 1,464,518 to 1,464,784
GFF1350
GFF1351 - Replication-associated recombination protein A, at 1,464,818 to 1,466,128
GFF1351
GFF1352 - Periplasmic pH-dependent serine endoprotease DegQ, at 1,466,148 to 1,467,605
GFF1352
Position (kb) 1464
1465
1466
1467 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1463.825 kb on - strand at 1463.909 kb on - strand, within GFF1348 at 1463.947 kb on + strand, within GFF1348 at 1463.983 kb on + strand, within GFF1348 at 1463.984 kb on - strand, within GFF1348 at 1464.171 kb on - strand, within GFF1348 at 1464.171 kb on - strand, within GFF1348 at 1464.311 kb on - strand, within GFF1349 at 1464.322 kb on + strand, within GFF1349 at 1464.323 kb on - strand, within GFF1349 at 1464.361 kb on - strand, within GFF1349 at 1464.466 kb on + strand, within GFF1349 at 1464.466 kb on + strand, within GFF1349 at 1464.627 kb on + strand, within GFF1350 at 1464.627 kb on + strand, within GFF1350 at 1464.627 kb on + strand, within GFF1350 at 1464.627 kb on + strand, within GFF1350 at 1464.628 kb on - strand, within GFF1350 at 1464.628 kb on - strand, within GFF1350 at 1464.628 kb on - strand, within GFF1350 at 1464.784 kb on + strand at 1464.785 kb on - strand at 1464.785 kb on - strand at 1464.785 kb on - strand at 1464.786 kb on + strand at 1464.786 kb on + strand at 1464.786 kb on + strand at 1464.786 kb on + strand at 1464.786 kb on + strand at 1464.787 kb on - strand at 1464.787 kb on - strand at 1464.855 kb on + strand at 1464.856 kb on - strand at 1464.907 kb on - strand at 1464.939 kb on + strand at 1464.979 kb on - strand, within GFF1351 at 1465.101 kb on + strand, within GFF1351 at 1465.101 kb on + strand, within GFF1351 at 1465.134 kb on + strand, within GFF1351 at 1465.134 kb on + strand, within GFF1351 at 1465.135 kb on - strand, within GFF1351 at 1465.135 kb on - strand, within GFF1351 at 1465.135 kb on - strand, within GFF1351 at 1465.135 kb on - strand, within GFF1351 at 1465.189 kb on - strand, within GFF1351 at 1465.320 kb on + strand, within GFF1351 at 1465.321 kb on - strand, within GFF1351 at 1465.323 kb on + strand, within GFF1351 at 1465.323 kb on + strand, within GFF1351 at 1465.323 kb on + strand, within GFF1351 at 1465.324 kb on - strand, within GFF1351 at 1465.383 kb on + strand, within GFF1351 at 1465.383 kb on + strand, within GFF1351 at 1465.383 kb on + strand, within GFF1351 at 1465.384 kb on - strand, within GFF1351 at 1465.408 kb on - strand, within GFF1351 at 1465.408 kb on - strand, within GFF1351 at 1466.335 kb on + strand, within GFF1352
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 1,463,825 - -0.5 1,463,909 - GFF1348 0.19 -0.9 1,463,947 + GFF1348 0.29 +0.9 1,463,983 + GFF1348 0.38 +0.6 1,463,984 - GFF1348 0.38 -1.4 1,464,171 - GFF1348 0.86 -0.4 1,464,171 - GFF1348 0.86 +0.4 1,464,311 - GFF1349 0.24 -0.4 1,464,322 + GFF1349 0.28 -0.5 1,464,323 - GFF1349 0.29 -0.2 1,464,361 - GFF1349 0.42 +0.6 1,464,466 + GFF1349 0.80 +0.6 1,464,466 + GFF1349 0.80 -0.4 1,464,627 + GFF1350 0.41 +0.1 1,464,627 + GFF1350 0.41 -2.0 1,464,627 + GFF1350 0.41 -1.3 1,464,627 + GFF1350 0.41 -0.1 1,464,628 - GFF1350 0.41 -1.0 1,464,628 - GFF1350 0.41 -0.6 1,464,628 - GFF1350 0.41 -0.5 1,464,784 + -0.8 1,464,785 - +0.3 1,464,785 - -0.4 1,464,785 - -1.1 1,464,786 + +0.1 1,464,786 + +0.5 1,464,786 + +0.3 1,464,786 + +1.1 1,464,786 + -2.0 1,464,787 - -0.9 1,464,787 - -0.3 1,464,855 + +0.2 1,464,856 - -0.5 1,464,907 - -0.9 1,464,939 + -0.0 1,464,979 - GFF1351 0.12 -0.6 1,465,101 + GFF1351 0.22 +0.2 1,465,101 + GFF1351 0.22 -0.9 1,465,134 + GFF1351 0.24 -1.0 1,465,134 + GFF1351 0.24 -0.6 1,465,135 - GFF1351 0.24 +0.4 1,465,135 - GFF1351 0.24 -0.6 1,465,135 - GFF1351 0.24 -0.2 1,465,135 - GFF1351 0.24 -0.5 1,465,189 - GFF1351 0.28 -0.1 1,465,320 + GFF1351 0.38 -0.2 1,465,321 - GFF1351 0.38 +2.1 1,465,323 + GFF1351 0.39 -0.3 1,465,323 + GFF1351 0.39 +0.7 1,465,323 + GFF1351 0.39 +0.6 1,465,324 - GFF1351 0.39 +0.1 1,465,383 + GFF1351 0.43 +0.1 1,465,383 + GFF1351 0.43 -0.8 1,465,383 + GFF1351 0.43 -0.1 1,465,384 - GFF1351 0.43 -1.0 1,465,408 - GFF1351 0.45 +0.0 1,465,408 - GFF1351 0.45 +0.3 1,466,335 + GFF1352 0.13 -0.4
Or see this region's nucleotide sequence