Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF127 and GFF128 are separated by 18 nucleotides GFF128 and GFF129 are separated by 474 nucleotides
GFF127 - Cyclopropane-fatty-acyl-phospholipid synthase, at 136,428 to 137,702
GFF127
GFF128 - hypothetical protein, at 137,721 to 139,175
GFF128
GFF129 - Leucine--tRNA ligase, at 139,650 to 142,334
GFF129
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -2
-1
0
1 at 136.816 kb on - strand, within GFF127 at 136.836 kb on + strand, within GFF127 at 136.837 kb on - strand, within GFF127 at 136.837 kb on - strand, within GFF127 at 137.013 kb on + strand, within GFF127 at 137.014 kb on - strand, within GFF127 at 137.014 kb on - strand, within GFF127 at 137.325 kb on + strand, within GFF127 at 137.325 kb on + strand, within GFF127 at 137.326 kb on - strand, within GFF127 at 137.326 kb on - strand, within GFF127 at 137.326 kb on - strand, within GFF127 at 137.326 kb on - strand, within GFF127 at 137.427 kb on + strand, within GFF127 at 137.428 kb on - strand, within GFF127 at 137.700 kb on + strand at 137.701 kb on - strand at 137.731 kb on + strand at 137.732 kb on - strand at 137.866 kb on + strand at 137.866 kb on + strand at 137.866 kb on + strand at 137.866 kb on + strand at 137.866 kb on + strand at 137.867 kb on - strand, within GFF128 at 137.867 kb on - strand, within GFF128 at 137.867 kb on - strand, within GFF128 at 137.867 kb on - strand, within GFF128 at 137.867 kb on - strand, within GFF128 at 137.867 kb on - strand, within GFF128 at 137.977 kb on + strand, within GFF128 at 137.977 kb on + strand, within GFF128 at 138.295 kb on + strand, within GFF128 at 138.461 kb on - strand, within GFF128 at 138.475 kb on + strand, within GFF128 at 138.475 kb on + strand, within GFF128 at 138.476 kb on - strand, within GFF128 at 138.478 kb on + strand, within GFF128 at 138.853 kb on + strand, within GFF128 at 138.904 kb on + strand, within GFF128
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 136,816 - GFF127 0.30 +0.3 136,836 + GFF127 0.32 +0.1 136,837 - GFF127 0.32 +1.3 136,837 - GFF127 0.32 +1.1 137,013 + GFF127 0.46 -0.6 137,014 - GFF127 0.46 +0.7 137,014 - GFF127 0.46 +0.4 137,325 + GFF127 0.70 -0.5 137,325 + GFF127 0.70 -0.2 137,326 - GFF127 0.70 +0.4 137,326 - GFF127 0.70 -0.5 137,326 - GFF127 0.70 -0.0 137,326 - GFF127 0.70 +0.8 137,427 + GFF127 0.78 +0.5 137,428 - GFF127 0.78 +0.8 137,700 + -1.9 137,701 - +0.6 137,731 + -1.0 137,732 - +0.0 137,866 + +0.5 137,866 + +0.3 137,866 + -0.1 137,866 + +0.2 137,866 + -0.1 137,867 - GFF128 0.10 +0.4 137,867 - GFF128 0.10 -0.0 137,867 - GFF128 0.10 -0.8 137,867 - GFF128 0.10 +0.6 137,867 - GFF128 0.10 -0.2 137,867 - GFF128 0.10 +0.3 137,977 + GFF128 0.18 +0.0 137,977 + GFF128 0.18 +0.2 138,295 + GFF128 0.39 -0.5 138,461 - GFF128 0.51 +0.0 138,475 + GFF128 0.52 -0.2 138,475 + GFF128 0.52 +0.6 138,476 - GFF128 0.52 -0.1 138,478 + GFF128 0.52 +0.1 138,853 + GFF128 0.78 +1.6 138,904 + GFF128 0.81 -0.6
Or see this region's nucleotide sequence