Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS18645

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS18640 and RR41_RS18645 are separated by 355 nucleotidesRR41_RS18645 and RR41_RS18650 are separated by 5 nucleotidesRR41_RS18650 and RR41_RS18655 are separated by 18 nucleotides RR41_RS18640: RR41_RS18640 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 3,877,310 to 3,878,584 _RS18640 RR41_RS18645: RR41_RS18645 - polysaccharide biosynthesis/export family protein, at 3,878,940 to 3,880,040 _RS18645 RR41_RS18650: RR41_RS18650 - low molecular weight phosphotyrosine protein phosphatase, at 3,880,046 to 3,880,474 _RS18650 RR41_RS18655: RR41_RS18655 - polysaccharide biosynthesis tyrosine autokinase, at 3,880,493 to 3,882,676 _RS18655 Position (kb) 3878 3879 3880 3881Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3878.691 kb on + strandat 3878.691 kb on + strandat 3878.692 kb on - strandat 3878.692 kb on - strandat 3878.692 kb on - strandat 3878.692 kb on - strandat 3878.693 kb on + strandat 3878.693 kb on + strandat 3878.693 kb on + strandat 3878.703 kb on + strandat 3878.704 kb on - strandat 3878.712 kb on + strandat 3878.712 kb on + strandat 3878.712 kb on + strandat 3878.712 kb on + strandat 3878.712 kb on + strandat 3878.712 kb on + strandat 3878.713 kb on - strandat 3878.713 kb on - strandat 3878.713 kb on - strandat 3878.713 kb on - strandat 3878.714 kb on + strandat 3878.714 kb on + strandat 3878.714 kb on + strandat 3878.725 kb on + strandat 3878.737 kb on + strandat 3878.737 kb on + strandat 3878.754 kb on - strandat 3878.780 kb on + strandat 3878.798 kb on - strandat 3878.802 kb on + strandat 3878.802 kb on + strandat 3878.802 kb on + strandat 3878.803 kb on - strandat 3878.803 kb on - strandat 3878.803 kb on - strandat 3878.803 kb on - strandat 3878.803 kb on - strandat 3878.808 kb on + strandat 3878.808 kb on + strandat 3878.808 kb on + strandat 3878.808 kb on + strandat 3878.809 kb on - strandat 3878.809 kb on - strandat 3878.819 kb on - strandat 3878.853 kb on + strandat 3878.875 kb on + strandat 3878.906 kb on + strandat 3878.923 kb on + strandat 3878.946 kb on + strandat 3879.171 kb on - strand, within RR41_RS18645at 3879.171 kb on - strand, within RR41_RS18645at 3879.171 kb on - strand, within RR41_RS18645at 3879.323 kb on - strand, within RR41_RS18645at 3879.467 kb on - strand, within RR41_RS18645at 3879.512 kb on - strand, within RR41_RS18645at 3879.514 kb on - strand, within RR41_RS18645at 3879.542 kb on - strand, within RR41_RS18645at 3879.565 kb on - strand, within RR41_RS18645at 3879.642 kb on - strand, within RR41_RS18645at 3879.642 kb on - strand, within RR41_RS18645at 3879.670 kb on + strand, within RR41_RS18645at 3879.670 kb on + strand, within RR41_RS18645at 3879.672 kb on + strand, within RR41_RS18645at 3879.672 kb on + strand, within RR41_RS18645at 3879.673 kb on - strand, within RR41_RS18645at 3879.793 kb on + strand, within RR41_RS18645at 3879.947 kb on - strandat 3879.961 kb on + strandat 3880.012 kb on + strandat 3880.109 kb on + strand, within RR41_RS18650at 3880.116 kb on + strand, within RR41_RS18650at 3880.169 kb on - strand, within RR41_RS18650at 3880.237 kb on + strand, within RR41_RS18650at 3880.267 kb on + strand, within RR41_RS18650at 3880.466 kb on + strandat 3880.468 kb on + strandat 3880.493 kb on - strandat 3880.600 kb on - strandat 3880.608 kb on + strandat 3880.633 kb on + strandat 3880.696 kb on - strandat 3880.954 kb on - strand, within RR41_RS18655at 3881.024 kb on - strand, within RR41_RS18655

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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3,878,691 + +1.2
3,878,691 + -1.3
3,878,692 - +1.0
3,878,692 - -1.1
3,878,692 - -0.8
3,878,692 - -0.8
3,878,693 + -0.3
3,878,693 + +1.6
3,878,693 + -0.0
3,878,703 + -1.4
3,878,704 - -0.6
3,878,712 + -0.5
3,878,712 + -0.2
3,878,712 + -1.6
3,878,712 + -0.8
3,878,712 + +0.1
3,878,712 + +0.3
3,878,713 - +0.2
3,878,713 - +2.3
3,878,713 - +0.5
3,878,713 - -0.3
3,878,714 + -1.1
3,878,714 + -1.8
3,878,714 + -1.6
3,878,725 + -0.6
3,878,737 + -0.5
3,878,737 + -0.3
3,878,754 - -0.1
3,878,780 + -0.4
3,878,798 - -0.9
3,878,802 + -0.2
3,878,802 + -0.9
3,878,802 + +1.6
3,878,803 - -1.5
3,878,803 - +0.2
3,878,803 - -1.0
3,878,803 - -2.7
3,878,803 - -0.7
3,878,808 + -0.6
3,878,808 + -0.8
3,878,808 + -0.8
3,878,808 + +0.6
3,878,809 - -1.1
3,878,809 - +0.6
3,878,819 - -2.3
3,878,853 + -1.5
3,878,875 + -1.5
3,878,906 + -0.4
3,878,923 + -2.0
3,878,946 + -3.1
3,879,171 - RR41_RS18645 0.21 +0.2
3,879,171 - RR41_RS18645 0.21 -1.3
3,879,171 - RR41_RS18645 0.21 -1.6
3,879,323 - RR41_RS18645 0.35 -1.6
3,879,467 - RR41_RS18645 0.48 +2.8
3,879,512 - RR41_RS18645 0.52 -1.8
3,879,514 - RR41_RS18645 0.52 -2.4
3,879,542 - RR41_RS18645 0.55 +0.2
3,879,565 - RR41_RS18645 0.57 -1.7
3,879,642 - RR41_RS18645 0.64 -0.8
3,879,642 - RR41_RS18645 0.64 -1.6
3,879,670 + RR41_RS18645 0.66 -0.4
3,879,670 + RR41_RS18645 0.66 +0.2
3,879,672 + RR41_RS18645 0.66 -0.8
3,879,672 + RR41_RS18645 0.66 -0.4
3,879,673 - RR41_RS18645 0.67 -1.8
3,879,793 + RR41_RS18645 0.77 -1.4
3,879,947 - -0.8
3,879,961 + -1.6
3,880,012 + -0.8
3,880,109 + RR41_RS18650 0.15 -1.1
3,880,116 + RR41_RS18650 0.16 +0.2
3,880,169 - RR41_RS18650 0.29 +1.2
3,880,237 + RR41_RS18650 0.45 +0.2
3,880,267 + RR41_RS18650 0.52 -1.8
3,880,466 + +0.2
3,880,468 + +0.2
3,880,493 - -1.6
3,880,600 - -1.1
3,880,608 + +1.2
3,880,633 + -0.6
3,880,696 - -1.6
3,880,954 - RR41_RS18655 0.21 -0.1
3,881,024 - RR41_RS18655 0.24 -0.8

Or see this region's nucleotide sequence