Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS18640 and RR41_RS18645 are separated by 355 nucleotides RR41_RS18645 and RR41_RS18650 are separated by 5 nucleotides RR41_RS18650 and RR41_RS18655 are separated by 18 nucleotides
RR41_RS18640: RR41_RS18640 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 3,877,310 to 3,878,584
_RS18640
RR41_RS18645: RR41_RS18645 - polysaccharide biosynthesis/export family protein, at 3,878,940 to 3,880,040
_RS18645
RR41_RS18650: RR41_RS18650 - low molecular weight phosphotyrosine protein phosphatase, at 3,880,046 to 3,880,474
_RS18650
RR41_RS18655: RR41_RS18655 - polysaccharide biosynthesis tyrosine autokinase, at 3,880,493 to 3,882,676
_RS18655
Position (kb)
3878
3879
3880
3881 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3878.691 kb on + strand at 3878.691 kb on + strand at 3878.692 kb on - strand at 3878.692 kb on - strand at 3878.692 kb on - strand at 3878.692 kb on - strand at 3878.693 kb on + strand at 3878.693 kb on + strand at 3878.693 kb on + strand at 3878.703 kb on + strand at 3878.704 kb on - strand at 3878.712 kb on + strand at 3878.712 kb on + strand at 3878.712 kb on + strand at 3878.712 kb on + strand at 3878.712 kb on + strand at 3878.712 kb on + strand at 3878.713 kb on - strand at 3878.713 kb on - strand at 3878.713 kb on - strand at 3878.713 kb on - strand at 3878.714 kb on + strand at 3878.714 kb on + strand at 3878.714 kb on + strand at 3878.725 kb on + strand at 3878.737 kb on + strand at 3878.737 kb on + strand at 3878.754 kb on - strand at 3878.780 kb on + strand at 3878.798 kb on - strand at 3878.802 kb on + strand at 3878.802 kb on + strand at 3878.802 kb on + strand at 3878.803 kb on - strand at 3878.803 kb on - strand at 3878.803 kb on - strand at 3878.803 kb on - strand at 3878.803 kb on - strand at 3878.808 kb on + strand at 3878.808 kb on + strand at 3878.808 kb on + strand at 3878.808 kb on + strand at 3878.809 kb on - strand at 3878.809 kb on - strand at 3878.819 kb on - strand at 3878.853 kb on + strand at 3878.875 kb on + strand at 3878.906 kb on + strand at 3878.923 kb on + strand at 3878.946 kb on + strand at 3879.171 kb on - strand, within RR41_RS18645 at 3879.171 kb on - strand, within RR41_RS18645 at 3879.171 kb on - strand, within RR41_RS18645 at 3879.323 kb on - strand, within RR41_RS18645 at 3879.467 kb on - strand, within RR41_RS18645 at 3879.512 kb on - strand, within RR41_RS18645 at 3879.514 kb on - strand, within RR41_RS18645 at 3879.542 kb on - strand, within RR41_RS18645 at 3879.565 kb on - strand, within RR41_RS18645 at 3879.642 kb on - strand, within RR41_RS18645 at 3879.642 kb on - strand, within RR41_RS18645 at 3879.670 kb on + strand, within RR41_RS18645 at 3879.670 kb on + strand, within RR41_RS18645 at 3879.672 kb on + strand, within RR41_RS18645 at 3879.672 kb on + strand, within RR41_RS18645 at 3879.673 kb on - strand, within RR41_RS18645 at 3879.793 kb on + strand, within RR41_RS18645 at 3879.947 kb on - strand at 3879.961 kb on + strand at 3880.012 kb on + strand at 3880.109 kb on + strand, within RR41_RS18650 at 3880.116 kb on + strand, within RR41_RS18650 at 3880.169 kb on - strand, within RR41_RS18650 at 3880.237 kb on + strand, within RR41_RS18650 at 3880.267 kb on + strand, within RR41_RS18650 at 3880.466 kb on + strand at 3880.468 kb on + strand at 3880.493 kb on - strand at 3880.600 kb on - strand at 3880.608 kb on + strand at 3880.633 kb on + strand at 3880.696 kb on - strand at 3880.954 kb on - strand, within RR41_RS18655 at 3881.024 kb on - strand, within RR41_RS18655
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 3,878,691 + +1.2 3,878,691 + -1.3 3,878,692 - +1.0 3,878,692 - -1.1 3,878,692 - -0.8 3,878,692 - -0.8 3,878,693 + -0.3 3,878,693 + +1.6 3,878,693 + -0.0 3,878,703 + -1.4 3,878,704 - -0.6 3,878,712 + -0.5 3,878,712 + -0.2 3,878,712 + -1.6 3,878,712 + -0.8 3,878,712 + +0.1 3,878,712 + +0.3 3,878,713 - +0.2 3,878,713 - +2.3 3,878,713 - +0.5 3,878,713 - -0.3 3,878,714 + -1.1 3,878,714 + -1.8 3,878,714 + -1.6 3,878,725 + -0.6 3,878,737 + -0.5 3,878,737 + -0.3 3,878,754 - -0.1 3,878,780 + -0.4 3,878,798 - -0.9 3,878,802 + -0.2 3,878,802 + -0.9 3,878,802 + +1.6 3,878,803 - -1.5 3,878,803 - +0.2 3,878,803 - -1.0 3,878,803 - -2.7 3,878,803 - -0.7 3,878,808 + -0.6 3,878,808 + -0.8 3,878,808 + -0.8 3,878,808 + +0.6 3,878,809 - -1.1 3,878,809 - +0.6 3,878,819 - -2.3 3,878,853 + -1.5 3,878,875 + -1.5 3,878,906 + -0.4 3,878,923 + -2.0 3,878,946 + -3.1 3,879,171 - RR41_RS18645 0.21 +0.2 3,879,171 - RR41_RS18645 0.21 -1.3 3,879,171 - RR41_RS18645 0.21 -1.6 3,879,323 - RR41_RS18645 0.35 -1.6 3,879,467 - RR41_RS18645 0.48 +2.8 3,879,512 - RR41_RS18645 0.52 -1.8 3,879,514 - RR41_RS18645 0.52 -2.4 3,879,542 - RR41_RS18645 0.55 +0.2 3,879,565 - RR41_RS18645 0.57 -1.7 3,879,642 - RR41_RS18645 0.64 -0.8 3,879,642 - RR41_RS18645 0.64 -1.6 3,879,670 + RR41_RS18645 0.66 -0.4 3,879,670 + RR41_RS18645 0.66 +0.2 3,879,672 + RR41_RS18645 0.66 -0.8 3,879,672 + RR41_RS18645 0.66 -0.4 3,879,673 - RR41_RS18645 0.67 -1.8 3,879,793 + RR41_RS18645 0.77 -1.4 3,879,947 - -0.8 3,879,961 + -1.6 3,880,012 + -0.8 3,880,109 + RR41_RS18650 0.15 -1.1 3,880,116 + RR41_RS18650 0.16 +0.2 3,880,169 - RR41_RS18650 0.29 +1.2 3,880,237 + RR41_RS18650 0.45 +0.2 3,880,267 + RR41_RS18650 0.52 -1.8 3,880,466 + +0.2 3,880,468 + +0.2 3,880,493 - -1.6 3,880,600 - -1.1 3,880,608 + +1.2 3,880,633 + -0.6 3,880,696 - -1.6 3,880,954 - RR41_RS18655 0.21 -0.1 3,881,024 - RR41_RS18655 0.24 -0.8
Or see this region's nucleotide sequence