Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS17275

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS17265 and RR41_RS17270 overlap by 4 nucleotidesRR41_RS17270 and RR41_RS17275 overlap by 1 nucleotidesRR41_RS17275 and RR41_RS17280 are separated by 2 nucleotidesRR41_RS17280 and RR41_RS17285 overlap by 4 nucleotidesRR41_RS17285 and RR41_RS17290 are separated by 12 nucleotides RR41_RS17265: RR41_RS17265 - monovalent cation/H+ antiporter subunit A, at 3,595,500 to 3,598,349 _RS17265 RR41_RS17270: RR41_RS17270 - Na+/H+ antiporter subunit C, at 3,598,346 to 3,598,714 _RS17270 RR41_RS17275: RR41_RS17275 - monovalent cation/H+ antiporter subunit D, at 3,598,714 to 3,600,525 _RS17275 RR41_RS17280: RR41_RS17280 - Na+/H+ antiporter subunit E, at 3,600,528 to 3,601,055 _RS17280 RR41_RS17285: RR41_RS17285 - monovalent cation/H+ antiporter subunit F, at 3,601,052 to 3,601,327 _RS17285 RR41_RS17290: RR41_RS17290 - Na+/H+ antiporter subunit G, at 3,601,340 to 3,601,744 _RS17290 Position (kb) 3598 3599 3600 3601Strain fitness (log2 ratio) -3 -2 -1 0 1at 3598.285 kb on + strandat 3598.310 kb on + strandat 3598.310 kb on + strandat 3598.310 kb on + strandat 3598.310 kb on + strandat 3598.310 kb on + strandat 3598.626 kb on + strand, within RR41_RS17270at 3598.688 kb on + strandat 3598.688 kb on + strandat 3600.306 kb on + strand, within RR41_RS17275at 3600.322 kb on + strand, within RR41_RS17275at 3600.334 kb on + strand, within RR41_RS17275at 3600.352 kb on + strandat 3600.352 kb on + strandat 3600.375 kb on + strandat 3600.382 kb on + strandat 3600.441 kb on + strandat 3600.442 kb on - strandat 3600.513 kb on + strandat 3601.266 kb on + strand, within RR41_RS17285at 3601.290 kb on + strand, within RR41_RS17285at 3601.290 kb on + strand, within RR41_RS17285at 3601.298 kb on + strand, within RR41_RS17285at 3601.317 kb on + strandat 3601.348 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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3,598,285 + -1.7
3,598,310 + -0.4
3,598,310 + -1.7
3,598,310 + +0.3
3,598,310 + -0.2
3,598,310 + -1.6
3,598,626 + RR41_RS17270 0.76 -2.3
3,598,688 + +0.3
3,598,688 + -0.7
3,600,306 + RR41_RS17275 0.88 -1.0
3,600,322 + RR41_RS17275 0.89 -3.2
3,600,334 + RR41_RS17275 0.89 -1.9
3,600,352 + -0.7
3,600,352 + -0.7
3,600,375 + -0.1
3,600,382 + -2.0
3,600,441 + +0.3
3,600,442 - -1.5
3,600,513 + -0.0
3,601,266 + RR41_RS17285 0.78 +0.3
3,601,290 + RR41_RS17285 0.86 +1.0
3,601,290 + RR41_RS17285 0.86 +0.5
3,601,298 + RR41_RS17285 0.89 +0.8
3,601,317 + +0.7
3,601,348 + -0.7

Or see this region's nucleotide sequence