Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS17265 and RR41_RS17270 overlap by 4 nucleotides RR41_RS17270 and RR41_RS17275 overlap by 1 nucleotides RR41_RS17275 and RR41_RS17280 are separated by 2 nucleotides RR41_RS17280 and RR41_RS17285 overlap by 4 nucleotides RR41_RS17285 and RR41_RS17290 are separated by 12 nucleotides
RR41_RS17265: RR41_RS17265 - monovalent cation/H+ antiporter subunit A, at 3,595,500 to 3,598,349
_RS17265
RR41_RS17270: RR41_RS17270 - Na+/H+ antiporter subunit C, at 3,598,346 to 3,598,714
_RS17270
RR41_RS17275: RR41_RS17275 - monovalent cation/H+ antiporter subunit D, at 3,598,714 to 3,600,525
_RS17275
RR41_RS17280: RR41_RS17280 - Na+/H+ antiporter subunit E, at 3,600,528 to 3,601,055
_RS17280
RR41_RS17285: RR41_RS17285 - monovalent cation/H+ antiporter subunit F, at 3,601,052 to 3,601,327
_RS17285
RR41_RS17290: RR41_RS17290 - Na+/H+ antiporter subunit G, at 3,601,340 to 3,601,744
_RS17290
Position (kb)
3598
3599
3600
3601 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3598.285 kb on + strand at 3598.310 kb on + strand at 3598.310 kb on + strand at 3598.310 kb on + strand at 3598.310 kb on + strand at 3598.310 kb on + strand at 3598.626 kb on + strand, within RR41_RS17270 at 3598.688 kb on + strand at 3598.688 kb on + strand at 3600.306 kb on + strand, within RR41_RS17275 at 3600.322 kb on + strand, within RR41_RS17275 at 3600.334 kb on + strand, within RR41_RS17275 at 3600.352 kb on + strand at 3600.352 kb on + strand at 3600.375 kb on + strand at 3600.382 kb on + strand at 3600.441 kb on + strand at 3600.442 kb on - strand at 3600.513 kb on + strand at 3601.266 kb on + strand, within RR41_RS17285 at 3601.290 kb on + strand, within RR41_RS17285 at 3601.290 kb on + strand, within RR41_RS17285 at 3601.298 kb on + strand, within RR41_RS17285 at 3601.317 kb on + strand at 3601.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 3,598,285 + -1.7 3,598,310 + -0.4 3,598,310 + -1.7 3,598,310 + +0.3 3,598,310 + -0.2 3,598,310 + -1.6 3,598,626 + RR41_RS17270 0.76 -2.3 3,598,688 + +0.3 3,598,688 + -0.7 3,600,306 + RR41_RS17275 0.88 -1.0 3,600,322 + RR41_RS17275 0.89 -3.2 3,600,334 + RR41_RS17275 0.89 -1.9 3,600,352 + -0.7 3,600,352 + -0.7 3,600,375 + -0.1 3,600,382 + -2.0 3,600,441 + +0.3 3,600,442 - -1.5 3,600,513 + -0.0 3,601,266 + RR41_RS17285 0.78 +0.3 3,601,290 + RR41_RS17285 0.86 +1.0 3,601,290 + RR41_RS17285 0.86 +0.5 3,601,298 + RR41_RS17285 0.89 +0.8 3,601,317 + +0.7 3,601,348 + -0.7
Or see this region's nucleotide sequence