Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS16400 and RR41_RS16405 are separated by 97 nucleotides RR41_RS16405 and RR41_RS16410 are separated by 11 nucleotides RR41_RS16410 and RR41_RS16415 are separated by 27 nucleotides RR41_RS16415 and RR41_RS16420 are separated by 67 nucleotides
RR41_RS16400: RR41_RS16400 - ribosome small subunit-dependent GTPase A, at 3,406,382 to 3,407,440
_RS16400
RR41_RS16405: RR41_RS16405 - rhodanese-like domain-containing protein, at 3,407,538 to 3,407,954
_RS16405
RR41_RS16410: RR41_RS16410 - glutaredoxin 3, at 3,407,966 to 3,408,223
_RS16410
RR41_RS16415: RR41_RS16415 - protein-export chaperone SecB, at 3,408,251 to 3,408,709
_RS16415
RR41_RS16420: RR41_RS16420 - 4'-phosphopantetheinyl transferase superfamily protein, at 3,408,777 to 3,409,433
_RS16420
Position (kb)
3407
3408 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3407.397 kb on + strand at 3407.439 kb on - strand at 3407.486 kb on + strand at 3407.486 kb on + strand at 3407.486 kb on + strand at 3407.487 kb on - strand at 3407.487 kb on - strand at 3407.487 kb on - strand at 3407.487 kb on - strand at 3407.489 kb on - strand at 3407.490 kb on + strand at 3407.490 kb on + strand at 3407.490 kb on + strand at 3407.490 kb on + strand at 3407.490 kb on + strand at 3407.490 kb on + strand at 3407.491 kb on - strand at 3407.491 kb on - strand at 3407.491 kb on - strand at 3407.491 kb on - strand at 3407.491 kb on - strand at 3407.491 kb on - strand at 3407.491 kb on - strand at 3407.491 kb on - strand at 3407.491 kb on - strand at 3407.496 kb on - strand at 3407.497 kb on + strand at 3407.497 kb on + strand at 3407.498 kb on - strand at 3407.633 kb on + strand, within RR41_RS16405 at 3407.666 kb on + strand, within RR41_RS16405 at 3407.667 kb on - strand, within RR41_RS16405 at 3407.738 kb on + strand, within RR41_RS16405 at 3407.762 kb on + strand, within RR41_RS16405 at 3407.791 kb on + strand, within RR41_RS16405 at 3407.819 kb on + strand, within RR41_RS16405 at 3407.830 kb on + strand, within RR41_RS16405 at 3407.854 kb on + strand, within RR41_RS16405 at 3407.897 kb on + strand, within RR41_RS16405 at 3407.903 kb on + strand, within RR41_RS16405 at 3407.934 kb on - strand at 3408.714 kb on - strand at 3408.714 kb on - strand at 3408.715 kb on + strand at 3408.767 kb on + strand at 3408.768 kb on - strand at 3408.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 3,407,397 + -0.4 3,407,439 - -0.6 3,407,486 + -0.2 3,407,486 + -1.2 3,407,486 + -0.2 3,407,487 - -0.9 3,407,487 - -0.1 3,407,487 - +0.0 3,407,487 - -1.5 3,407,489 - -1.0 3,407,490 + -0.7 3,407,490 + -0.8 3,407,490 + -2.7 3,407,490 + -0.2 3,407,490 + +0.0 3,407,490 + +1.4 3,407,491 - -1.1 3,407,491 - +0.8 3,407,491 - +1.4 3,407,491 - -1.3 3,407,491 - -2.2 3,407,491 - -2.1 3,407,491 - -1.1 3,407,491 - +0.6 3,407,491 - +1.7 3,407,496 - -0.2 3,407,497 + -0.4 3,407,497 + -1.0 3,407,498 - +0.6 3,407,633 + RR41_RS16405 0.23 -0.2 3,407,666 + RR41_RS16405 0.31 -1.2 3,407,667 - RR41_RS16405 0.31 -1.6 3,407,738 + RR41_RS16405 0.48 -1.4 3,407,762 + RR41_RS16405 0.54 -3.2 3,407,791 + RR41_RS16405 0.61 -2.2 3,407,819 + RR41_RS16405 0.67 -1.4 3,407,830 + RR41_RS16405 0.70 -0.2 3,407,854 + RR41_RS16405 0.76 -1.0 3,407,897 + RR41_RS16405 0.86 -1.4 3,407,903 + RR41_RS16405 0.88 -0.4 3,407,934 - -1.0 3,408,714 - -0.8 3,408,714 - -1.8 3,408,715 + -1.0 3,408,767 + +1.4 3,408,768 - -1.8 3,408,779 - +0.6
Or see this region's nucleotide sequence