Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS16405

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS16400 and RR41_RS16405 are separated by 97 nucleotidesRR41_RS16405 and RR41_RS16410 are separated by 11 nucleotidesRR41_RS16410 and RR41_RS16415 are separated by 27 nucleotidesRR41_RS16415 and RR41_RS16420 are separated by 67 nucleotides RR41_RS16400: RR41_RS16400 - ribosome small subunit-dependent GTPase A, at 3,406,382 to 3,407,440 _RS16400 RR41_RS16405: RR41_RS16405 - rhodanese-like domain-containing protein, at 3,407,538 to 3,407,954 _RS16405 RR41_RS16410: RR41_RS16410 - glutaredoxin 3, at 3,407,966 to 3,408,223 _RS16410 RR41_RS16415: RR41_RS16415 - protein-export chaperone SecB, at 3,408,251 to 3,408,709 _RS16415 RR41_RS16420: RR41_RS16420 - 4'-phosphopantetheinyl transferase superfamily protein, at 3,408,777 to 3,409,433 _RS16420 Position (kb) 3407 3408Strain fitness (log2 ratio) -3 -2 -1 0 1at 3407.397 kb on + strandat 3407.439 kb on - strandat 3407.486 kb on + strandat 3407.486 kb on + strandat 3407.486 kb on + strandat 3407.487 kb on - strandat 3407.487 kb on - strandat 3407.487 kb on - strandat 3407.487 kb on - strandat 3407.489 kb on - strandat 3407.490 kb on + strandat 3407.490 kb on + strandat 3407.490 kb on + strandat 3407.490 kb on + strandat 3407.490 kb on + strandat 3407.490 kb on + strandat 3407.491 kb on - strandat 3407.491 kb on - strandat 3407.491 kb on - strandat 3407.491 kb on - strandat 3407.491 kb on - strandat 3407.491 kb on - strandat 3407.491 kb on - strandat 3407.491 kb on - strandat 3407.491 kb on - strandat 3407.496 kb on - strandat 3407.497 kb on + strandat 3407.497 kb on + strandat 3407.498 kb on - strandat 3407.633 kb on + strand, within RR41_RS16405at 3407.666 kb on + strand, within RR41_RS16405at 3407.667 kb on - strand, within RR41_RS16405at 3407.738 kb on + strand, within RR41_RS16405at 3407.762 kb on + strand, within RR41_RS16405at 3407.791 kb on + strand, within RR41_RS16405at 3407.819 kb on + strand, within RR41_RS16405at 3407.830 kb on + strand, within RR41_RS16405at 3407.854 kb on + strand, within RR41_RS16405at 3407.897 kb on + strand, within RR41_RS16405at 3407.903 kb on + strand, within RR41_RS16405at 3407.934 kb on - strandat 3408.714 kb on - strandat 3408.714 kb on - strandat 3408.715 kb on + strandat 3408.767 kb on + strandat 3408.768 kb on - strandat 3408.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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3,407,397 + -0.4
3,407,439 - -0.6
3,407,486 + -0.2
3,407,486 + -1.2
3,407,486 + -0.2
3,407,487 - -0.9
3,407,487 - -0.1
3,407,487 - +0.0
3,407,487 - -1.5
3,407,489 - -1.0
3,407,490 + -0.7
3,407,490 + -0.8
3,407,490 + -2.7
3,407,490 + -0.2
3,407,490 + +0.0
3,407,490 + +1.4
3,407,491 - -1.1
3,407,491 - +0.8
3,407,491 - +1.4
3,407,491 - -1.3
3,407,491 - -2.2
3,407,491 - -2.1
3,407,491 - -1.1
3,407,491 - +0.6
3,407,491 - +1.7
3,407,496 - -0.2
3,407,497 + -0.4
3,407,497 + -1.0
3,407,498 - +0.6
3,407,633 + RR41_RS16405 0.23 -0.2
3,407,666 + RR41_RS16405 0.31 -1.2
3,407,667 - RR41_RS16405 0.31 -1.6
3,407,738 + RR41_RS16405 0.48 -1.4
3,407,762 + RR41_RS16405 0.54 -3.2
3,407,791 + RR41_RS16405 0.61 -2.2
3,407,819 + RR41_RS16405 0.67 -1.4
3,407,830 + RR41_RS16405 0.70 -0.2
3,407,854 + RR41_RS16405 0.76 -1.0
3,407,897 + RR41_RS16405 0.86 -1.4
3,407,903 + RR41_RS16405 0.88 -0.4
3,407,934 - -1.0
3,408,714 - -0.8
3,408,714 - -1.8
3,408,715 + -1.0
3,408,767 + +1.4
3,408,768 - -1.8
3,408,779 - +0.6

Or see this region's nucleotide sequence