Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS14300 and RR41_RS14305 overlap by 4 nucleotides RR41_RS14305 and RR41_RS14310 are separated by 156 nucleotides RR41_RS14310 and RR41_RS14315 overlap by 1 nucleotides
RR41_RS14300: RR41_RS14300 - XRE family transcriptional regulator, at 2,984,349 to 2,985,428
_RS14300
RR41_RS14305: RR41_RS14305 - hypothetical protein, at 2,985,425 to 2,986,054
_RS14305
RR41_RS14310: RR41_RS14310 - hypothetical protein, at 2,986,211 to 2,987,656
_RS14310
RR41_RS14315: RR41_RS14315 - hypothetical protein, at 2,987,656 to 2,989,608
_RS14315
Position (kb)
2986
2987
2988 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2985.569 kb on + strand, within RR41_RS14305 at 2985.575 kb on + strand, within RR41_RS14305 at 2985.683 kb on - strand, within RR41_RS14305 at 2985.686 kb on + strand, within RR41_RS14305 at 2985.847 kb on + strand, within RR41_RS14305 at 2985.997 kb on + strand at 2986.004 kb on - strand at 2986.009 kb on - strand at 2986.054 kb on + strand at 2986.055 kb on - strand at 2986.129 kb on + strand at 2986.157 kb on - strand at 2986.174 kb on - strand at 2986.273 kb on - strand at 2986.337 kb on - strand at 2986.470 kb on - strand, within RR41_RS14310 at 2986.582 kb on + strand, within RR41_RS14310 at 2986.583 kb on - strand, within RR41_RS14310 at 2986.616 kb on - strand, within RR41_RS14310 at 2986.694 kb on - strand, within RR41_RS14310 at 2986.715 kb on + strand, within RR41_RS14310 at 2986.733 kb on - strand, within RR41_RS14310 at 2986.970 kb on + strand, within RR41_RS14310 at 2987.019 kb on - strand, within RR41_RS14310 at 2987.068 kb on + strand, within RR41_RS14310 at 2987.125 kb on + strand, within RR41_RS14310 at 2987.209 kb on + strand, within RR41_RS14310 at 2987.476 kb on + strand, within RR41_RS14310 at 2987.657 kb on + strand at 2987.661 kb on + strand at 2988.100 kb on + strand, within RR41_RS14315 at 2988.132 kb on + strand, within RR41_RS14315 at 2988.215 kb on - strand, within RR41_RS14315 at 2988.280 kb on + strand, within RR41_RS14315 at 2988.310 kb on - strand, within RR41_RS14315 at 2988.316 kb on - strand, within RR41_RS14315 at 2988.316 kb on - strand, within RR41_RS14315 at 2988.426 kb on + strand, within RR41_RS14315
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 2,985,569 + RR41_RS14305 0.23 -0.1 2,985,575 + RR41_RS14305 0.24 +0.7 2,985,683 - RR41_RS14305 0.41 -0.3 2,985,686 + RR41_RS14305 0.41 -0.3 2,985,847 + RR41_RS14305 0.67 -0.5 2,985,997 + +1.7 2,986,004 - -1.5 2,986,009 - -0.6 2,986,054 + +1.7 2,986,055 - +0.1 2,986,129 + +2.3 2,986,157 - +0.7 2,986,174 - -1.9 2,986,273 - -0.6 2,986,337 - +0.7 2,986,470 - RR41_RS14310 0.18 -0.6 2,986,582 + RR41_RS14310 0.26 +1.7 2,986,583 - RR41_RS14310 0.26 -0.6 2,986,616 - RR41_RS14310 0.28 -1.3 2,986,694 - RR41_RS14310 0.33 -1.6 2,986,715 + RR41_RS14310 0.35 -0.6 2,986,733 - RR41_RS14310 0.36 +1.4 2,986,970 + RR41_RS14310 0.52 -0.6 2,987,019 - RR41_RS14310 0.56 -0.9 2,987,068 + RR41_RS14310 0.59 -0.3 2,987,125 + RR41_RS14310 0.63 -0.6 2,987,209 + RR41_RS14310 0.69 -0.9 2,987,476 + RR41_RS14310 0.87 +0.7 2,987,657 + -1.3 2,987,661 + +2.0 2,988,100 + RR41_RS14315 0.23 +0.1 2,988,132 + RR41_RS14315 0.24 -0.2 2,988,215 - RR41_RS14315 0.29 -1.6 2,988,280 + RR41_RS14315 0.32 +1.0 2,988,310 - RR41_RS14315 0.33 +2.1 2,988,316 - RR41_RS14315 0.34 -0.9 2,988,316 - RR41_RS14315 0.34 -0.3 2,988,426 + RR41_RS14315 0.39 +0.7
Or see this region's nucleotide sequence