Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS14310

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS14300 and RR41_RS14305 overlap by 4 nucleotidesRR41_RS14305 and RR41_RS14310 are separated by 156 nucleotidesRR41_RS14310 and RR41_RS14315 overlap by 1 nucleotides RR41_RS14300: RR41_RS14300 - XRE family transcriptional regulator, at 2,984,349 to 2,985,428 _RS14300 RR41_RS14305: RR41_RS14305 - hypothetical protein, at 2,985,425 to 2,986,054 _RS14305 RR41_RS14310: RR41_RS14310 - hypothetical protein, at 2,986,211 to 2,987,656 _RS14310 RR41_RS14315: RR41_RS14315 - hypothetical protein, at 2,987,656 to 2,989,608 _RS14315 Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -2 -1 0 1 2at 2985.569 kb on + strand, within RR41_RS14305at 2985.575 kb on + strand, within RR41_RS14305at 2985.683 kb on - strand, within RR41_RS14305at 2985.686 kb on + strand, within RR41_RS14305at 2985.847 kb on + strand, within RR41_RS14305at 2985.997 kb on + strandat 2986.004 kb on - strandat 2986.009 kb on - strandat 2986.054 kb on + strandat 2986.055 kb on - strandat 2986.129 kb on + strandat 2986.157 kb on - strandat 2986.174 kb on - strandat 2986.273 kb on - strandat 2986.337 kb on - strandat 2986.470 kb on - strand, within RR41_RS14310at 2986.582 kb on + strand, within RR41_RS14310at 2986.583 kb on - strand, within RR41_RS14310at 2986.616 kb on - strand, within RR41_RS14310at 2986.694 kb on - strand, within RR41_RS14310at 2986.715 kb on + strand, within RR41_RS14310at 2986.733 kb on - strand, within RR41_RS14310at 2986.970 kb on + strand, within RR41_RS14310at 2987.019 kb on - strand, within RR41_RS14310at 2987.068 kb on + strand, within RR41_RS14310at 2987.125 kb on + strand, within RR41_RS14310at 2987.209 kb on + strand, within RR41_RS14310at 2987.476 kb on + strand, within RR41_RS14310at 2987.657 kb on + strandat 2987.661 kb on + strandat 2988.100 kb on + strand, within RR41_RS14315at 2988.132 kb on + strand, within RR41_RS14315at 2988.215 kb on - strand, within RR41_RS14315at 2988.280 kb on + strand, within RR41_RS14315at 2988.310 kb on - strand, within RR41_RS14315at 2988.316 kb on - strand, within RR41_RS14315at 2988.316 kb on - strand, within RR41_RS14315at 2988.426 kb on + strand, within RR41_RS14315

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,985,569 + RR41_RS14305 0.23 -0.1
2,985,575 + RR41_RS14305 0.24 +0.7
2,985,683 - RR41_RS14305 0.41 -0.3
2,985,686 + RR41_RS14305 0.41 -0.3
2,985,847 + RR41_RS14305 0.67 -0.5
2,985,997 + +1.7
2,986,004 - -1.5
2,986,009 - -0.6
2,986,054 + +1.7
2,986,055 - +0.1
2,986,129 + +2.3
2,986,157 - +0.7
2,986,174 - -1.9
2,986,273 - -0.6
2,986,337 - +0.7
2,986,470 - RR41_RS14310 0.18 -0.6
2,986,582 + RR41_RS14310 0.26 +1.7
2,986,583 - RR41_RS14310 0.26 -0.6
2,986,616 - RR41_RS14310 0.28 -1.3
2,986,694 - RR41_RS14310 0.33 -1.6
2,986,715 + RR41_RS14310 0.35 -0.6
2,986,733 - RR41_RS14310 0.36 +1.4
2,986,970 + RR41_RS14310 0.52 -0.6
2,987,019 - RR41_RS14310 0.56 -0.9
2,987,068 + RR41_RS14310 0.59 -0.3
2,987,125 + RR41_RS14310 0.63 -0.6
2,987,209 + RR41_RS14310 0.69 -0.9
2,987,476 + RR41_RS14310 0.87 +0.7
2,987,657 + -1.3
2,987,661 + +2.0
2,988,100 + RR41_RS14315 0.23 +0.1
2,988,132 + RR41_RS14315 0.24 -0.2
2,988,215 - RR41_RS14315 0.29 -1.6
2,988,280 + RR41_RS14315 0.32 +1.0
2,988,310 - RR41_RS14315 0.33 +2.1
2,988,316 - RR41_RS14315 0.34 -0.9
2,988,316 - RR41_RS14315 0.34 -0.3
2,988,426 + RR41_RS14315 0.39 +0.7

Or see this region's nucleotide sequence