Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS13725 and RR41_RS13730 are separated by 88 nucleotides RR41_RS13730 and RR41_RS13735 are separated by 4 nucleotides RR41_RS13735 and RR41_RS13740 are separated by 4 nucleotides RR41_RS13740 and RR41_RS13745 are separated by 135 nucleotides
RR41_RS13725: RR41_RS13725 - IclR family transcriptional regulator PcaU, at 2,870,250 to 2,871,062
_RS13725
RR41_RS13730: RR41_RS13730 - MBL fold metallo-hydrolase, at 2,871,151 to 2,872,017
_RS13730
RR41_RS13735: RR41_RS13735 - YeeE/YedE family protein, at 2,872,022 to 2,872,435
_RS13735
RR41_RS13740: RR41_RS13740 - YeeE/YedE family protein, at 2,872,440 to 2,872,853
_RS13740
RR41_RS13745: RR41_RS13745 - DUF6438 domain-containing protein, at 2,872,989 to 2,873,456
_RS13745
Position (kb)
2872
2873 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 2871.176 kb on - strand at 2871.296 kb on - strand, within RR41_RS13730 at 2871.355 kb on + strand, within RR41_RS13730 at 2871.373 kb on - strand, within RR41_RS13730 at 2871.373 kb on - strand, within RR41_RS13730 at 2871.396 kb on + strand, within RR41_RS13730 at 2871.399 kb on - strand, within RR41_RS13730 at 2871.409 kb on + strand, within RR41_RS13730 at 2871.439 kb on - strand, within RR41_RS13730 at 2871.602 kb on + strand, within RR41_RS13730 at 2871.774 kb on - strand, within RR41_RS13730 at 2872.137 kb on - strand, within RR41_RS13735 at 2872.139 kb on - strand, within RR41_RS13735 at 2872.311 kb on - strand, within RR41_RS13735 at 2872.315 kb on + strand, within RR41_RS13735 at 2872.441 kb on + strand at 2872.464 kb on - strand at 2872.510 kb on - strand, within RR41_RS13740 at 2872.560 kb on - strand, within RR41_RS13740 at 2872.663 kb on + strand, within RR41_RS13740 at 2872.663 kb on + strand, within RR41_RS13740 at 2872.664 kb on - strand, within RR41_RS13740 at 2872.665 kb on + strand, within RR41_RS13740 at 2872.728 kb on - strand, within RR41_RS13740 at 2872.782 kb on + strand, within RR41_RS13740 at 2872.789 kb on - strand, within RR41_RS13740 at 2872.789 kb on - strand, within RR41_RS13740 at 2872.793 kb on - strand, within RR41_RS13740 at 2872.854 kb on - strand at 2872.856 kb on - strand at 2872.995 kb on + strand at 2873.039 kb on + strand, within RR41_RS13745 at 2873.043 kb on + strand, within RR41_RS13745 at 2873.126 kb on - strand, within RR41_RS13745 at 2873.128 kb on + strand, within RR41_RS13745 at 2873.129 kb on - strand, within RR41_RS13745 at 2873.235 kb on + strand, within RR41_RS13745 at 2873.273 kb on + strand, within RR41_RS13745 at 2873.274 kb on - strand, within RR41_RS13745 at 2873.313 kb on + strand, within RR41_RS13745
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 2,871,176 - -0.2 2,871,296 - RR41_RS13730 0.17 +0.4 2,871,355 + RR41_RS13730 0.24 -1.0 2,871,373 - RR41_RS13730 0.26 +0.5 2,871,373 - RR41_RS13730 0.26 +0.2 2,871,396 + RR41_RS13730 0.28 +0.2 2,871,399 - RR41_RS13730 0.29 -0.2 2,871,409 + RR41_RS13730 0.30 -0.4 2,871,439 - RR41_RS13730 0.33 -0.8 2,871,602 + RR41_RS13730 0.52 +0.5 2,871,774 - RR41_RS13730 0.72 -0.5 2,872,137 - RR41_RS13735 0.28 +0.0 2,872,139 - RR41_RS13735 0.28 -0.5 2,872,311 - RR41_RS13735 0.70 -1.0 2,872,315 + RR41_RS13735 0.71 -1.9 2,872,441 + -1.0 2,872,464 - -0.8 2,872,510 - RR41_RS13740 0.17 -0.5 2,872,560 - RR41_RS13740 0.29 -1.8 2,872,663 + RR41_RS13740 0.54 -1.3 2,872,663 + RR41_RS13740 0.54 -0.6 2,872,664 - RR41_RS13740 0.54 +0.8 2,872,665 + RR41_RS13740 0.54 -1.6 2,872,728 - RR41_RS13740 0.70 +0.2 2,872,782 + RR41_RS13740 0.83 +3.0 2,872,789 - RR41_RS13740 0.84 +0.0 2,872,789 - RR41_RS13740 0.84 -0.2 2,872,793 - RR41_RS13740 0.85 +0.2 2,872,854 - -1.5 2,872,856 - +7.1 2,872,995 + +0.2 2,873,039 + RR41_RS13745 0.11 -1.0 2,873,043 + RR41_RS13745 0.12 -1.5 2,873,126 - RR41_RS13745 0.29 +0.6 2,873,128 + RR41_RS13745 0.30 -0.2 2,873,129 - RR41_RS13745 0.30 -0.9 2,873,235 + RR41_RS13745 0.53 -1.5 2,873,273 + RR41_RS13745 0.61 -0.8 2,873,274 - RR41_RS13745 0.61 -0.5 2,873,313 + RR41_RS13745 0.69 -0.2
Or see this region's nucleotide sequence