Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS13735

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS13725 and RR41_RS13730 are separated by 88 nucleotidesRR41_RS13730 and RR41_RS13735 are separated by 4 nucleotidesRR41_RS13735 and RR41_RS13740 are separated by 4 nucleotidesRR41_RS13740 and RR41_RS13745 are separated by 135 nucleotides RR41_RS13725: RR41_RS13725 - IclR family transcriptional regulator PcaU, at 2,870,250 to 2,871,062 _RS13725 RR41_RS13730: RR41_RS13730 - MBL fold metallo-hydrolase, at 2,871,151 to 2,872,017 _RS13730 RR41_RS13735: RR41_RS13735 - YeeE/YedE family protein, at 2,872,022 to 2,872,435 _RS13735 RR41_RS13740: RR41_RS13740 - YeeE/YedE family protein, at 2,872,440 to 2,872,853 _RS13740 RR41_RS13745: RR41_RS13745 - DUF6438 domain-containing protein, at 2,872,989 to 2,873,456 _RS13745 Position (kb) 2872 2873Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 2871.176 kb on - strandat 2871.296 kb on - strand, within RR41_RS13730at 2871.355 kb on + strand, within RR41_RS13730at 2871.373 kb on - strand, within RR41_RS13730at 2871.373 kb on - strand, within RR41_RS13730at 2871.396 kb on + strand, within RR41_RS13730at 2871.399 kb on - strand, within RR41_RS13730at 2871.409 kb on + strand, within RR41_RS13730at 2871.439 kb on - strand, within RR41_RS13730at 2871.602 kb on + strand, within RR41_RS13730at 2871.774 kb on - strand, within RR41_RS13730at 2872.137 kb on - strand, within RR41_RS13735at 2872.139 kb on - strand, within RR41_RS13735at 2872.311 kb on - strand, within RR41_RS13735at 2872.315 kb on + strand, within RR41_RS13735at 2872.441 kb on + strandat 2872.464 kb on - strandat 2872.510 kb on - strand, within RR41_RS13740at 2872.560 kb on - strand, within RR41_RS13740at 2872.663 kb on + strand, within RR41_RS13740at 2872.663 kb on + strand, within RR41_RS13740at 2872.664 kb on - strand, within RR41_RS13740at 2872.665 kb on + strand, within RR41_RS13740at 2872.728 kb on - strand, within RR41_RS13740at 2872.782 kb on + strand, within RR41_RS13740at 2872.789 kb on - strand, within RR41_RS13740at 2872.789 kb on - strand, within RR41_RS13740at 2872.793 kb on - strand, within RR41_RS13740at 2872.854 kb on - strandat 2872.856 kb on - strandat 2872.995 kb on + strandat 2873.039 kb on + strand, within RR41_RS13745at 2873.043 kb on + strand, within RR41_RS13745at 2873.126 kb on - strand, within RR41_RS13745at 2873.128 kb on + strand, within RR41_RS13745at 2873.129 kb on - strand, within RR41_RS13745at 2873.235 kb on + strand, within RR41_RS13745at 2873.273 kb on + strand, within RR41_RS13745at 2873.274 kb on - strand, within RR41_RS13745at 2873.313 kb on + strand, within RR41_RS13745

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,871,176 - -0.2
2,871,296 - RR41_RS13730 0.17 +0.4
2,871,355 + RR41_RS13730 0.24 -1.0
2,871,373 - RR41_RS13730 0.26 +0.5
2,871,373 - RR41_RS13730 0.26 +0.2
2,871,396 + RR41_RS13730 0.28 +0.2
2,871,399 - RR41_RS13730 0.29 -0.2
2,871,409 + RR41_RS13730 0.30 -0.4
2,871,439 - RR41_RS13730 0.33 -0.8
2,871,602 + RR41_RS13730 0.52 +0.5
2,871,774 - RR41_RS13730 0.72 -0.5
2,872,137 - RR41_RS13735 0.28 +0.0
2,872,139 - RR41_RS13735 0.28 -0.5
2,872,311 - RR41_RS13735 0.70 -1.0
2,872,315 + RR41_RS13735 0.71 -1.9
2,872,441 + -1.0
2,872,464 - -0.8
2,872,510 - RR41_RS13740 0.17 -0.5
2,872,560 - RR41_RS13740 0.29 -1.8
2,872,663 + RR41_RS13740 0.54 -1.3
2,872,663 + RR41_RS13740 0.54 -0.6
2,872,664 - RR41_RS13740 0.54 +0.8
2,872,665 + RR41_RS13740 0.54 -1.6
2,872,728 - RR41_RS13740 0.70 +0.2
2,872,782 + RR41_RS13740 0.83 +3.0
2,872,789 - RR41_RS13740 0.84 +0.0
2,872,789 - RR41_RS13740 0.84 -0.2
2,872,793 - RR41_RS13740 0.85 +0.2
2,872,854 - -1.5
2,872,856 - +7.1
2,872,995 + +0.2
2,873,039 + RR41_RS13745 0.11 -1.0
2,873,043 + RR41_RS13745 0.12 -1.5
2,873,126 - RR41_RS13745 0.29 +0.6
2,873,128 + RR41_RS13745 0.30 -0.2
2,873,129 - RR41_RS13745 0.30 -0.9
2,873,235 + RR41_RS13745 0.53 -1.5
2,873,273 + RR41_RS13745 0.61 -0.8
2,873,274 - RR41_RS13745 0.61 -0.5
2,873,313 + RR41_RS13745 0.69 -0.2

Or see this region's nucleotide sequence